-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_240

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7242, 7498
Sorry, prediction snap_scaffold_240-snap.2-T1 fails validation.
(ATG)	 GC	886-901	GT	GGG
(ACG)	 AG	1697-1761	GT	GGG
(CGC)	 AG	2197-2295	GT	GGG
(ATC)	 AG	2414-2482	GT	AGG
(TTC)	 AG	3246-3431	GT	GGG
(GCT)	 AG	3536-3671	GT	AGG
(GTC)	 AG	5279-5482	GT	CGG
(CGC)	 AG	6215-6407	GT	AGG
(GGA)	 AG	7242-7498	GT	CAG
-recovered snap_scaffold_240-snap.2-T1, initial, 886, 901
-recovered snap_scaffold_240-snap.2-T1, internal, 1697, 1761
-recovered snap_scaffold_240-snap.2-T1, internal, 2197, 2295
-recovered snap_scaffold_240-snap.2-T1, internal, 2414, 2482
-recovered snap_scaffold_240-snap.2-T1, internal, 3246, 3431
-recovered snap_scaffold_240-snap.2-T1, internal, 3536, 3671
-recovered snap_scaffold_240-snap.2-T1, internal, 5279, 5482
-recovered snap_scaffold_240-snap.2-T1, internal, 6215, 6407
-recovered snap_scaffold_240-snap.2-T1, internal, 7242, 7498
Valid prediction for Augustus_model.g39771.t1
Valid prediction for snap_scaffold_240-snap.1-T1
add_exon() Sorry, snap_scaffold_240-snap.1-T1 431-855-terminal-1 is invalid.
Couldn't classify 7242, 7498
Sorry, prediction GlimmerHMM_glimmerT_60058-T1 fails validation.
(ATG)	 AG	2808-2834	GT	CAG
(TTC)	 AG	3246-3431	GT	GGG
(GCT)	 AG	3536-3671	GT	AGG
(GTC)	 AG	5279-5482	GT	CGG
(CGC)	 AG	6215-6407	GT	AGG
(GGA)	 AG	7242-7498	GT	CAG
-recovered GlimmerHMM_glimmerT_60058-T1, initial, 2808, 2834
-recovered GlimmerHMM_glimmerT_60058-T1, internal, 2808, 2834
-recovered GlimmerHMM_glimmerT_60058-T1, internal, 3246, 3431
-recovered GlimmerHMM_glimmerT_60058-T1, internal, 3536, 3671
-recovered GlimmerHMM_glimmerT_60058-T1, internal, 5279, 5482
-recovered GlimmerHMM_glimmerT_60058-T1, internal, 6215, 6407
-recovered GlimmerHMM_glimmerT_60058-T1, internal, 7242, 7498

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9187
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support