-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_9729677-9876519

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.2052-T1
Valid prediction for GlimmerHMM_glimmerT_53226-T1
Valid prediction for snap_scaffold_24-snap.2051-T1
Valid prediction for snap_scaffold_24-snap.2049-T1
Valid prediction for snap_scaffold_24-snap.2059-T1
Valid prediction for snap_scaffold_24-snap.2075-T1
Valid prediction for GlimmerHMM_glimmerT_53221-T1
Valid prediction for snap_scaffold_24-snap.2068-T1
Valid prediction for snap_scaffold_24-snap.2061-T1
Valid prediction for snap_scaffold_24-snap.2055-T1
Valid prediction for GlimmerHMM_glimmerT_53234-T1
Valid prediction for snap_scaffold_24-snap.2084-T1
Valid prediction for snap_scaffold_24-snap.2080-T1
Valid prediction for GlimmerHMM_glimmerT_53239-T1
Valid prediction for snap_scaffold_24-snap.2065-T1
Valid prediction for snap_scaffold_24-snap.2063-T1
Valid prediction for snap_scaffold_24-snap.2073-T1
Valid prediction for snap_scaffold_24-snap.2062-T1
Valid prediction for GlimmerHMM_glimmerT_53229-T1
Valid prediction for snap_scaffold_24-snap.2047-T1
Valid prediction for snap_scaffold_24-snap.2077-T1
Valid prediction for GlimmerHMM_glimmerT_53240-T1
Valid prediction for GlimmerHMM_glimmerT_53216-T1
Valid prediction for GlimmerHMM_glimmerT_53225-T1
Valid prediction for GlimmerHMM_glimmerT_53235-T1
Valid prediction for Augustus_model.g35436.t1
Valid prediction for snap_scaffold_24-snap.2054-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g35433.t1
Valid prediction for Augustus_model.g35441.t1
Valid prediction for snap_scaffold_24-snap.2070-T1
Valid prediction for snap_scaffold_24-snap.2066-T1
Valid prediction for snap_scaffold_24-snap.2076-T1
Valid prediction for GlimmerHMM_glimmerT_53227-T1
Valid prediction for GlimmerHMM_glimmerT_53228-T1
Valid prediction for Augustus_model.g35437.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.2053-T1
Valid prediction for snap_scaffold_24-snap.2050-T1
Valid prediction for GlimmerHMM_glimmerT_53217-T1
Valid prediction for snap_scaffold_24-snap.2083-T1
Valid prediction for snap_scaffold_24-snap.2079-T1
Valid prediction for GlimmerHMM_glimmerT_53220-T1
Valid prediction for snap_scaffold_24-snap.2046-T1
Valid prediction for snap_scaffold_24-snap.2078-T1
Valid prediction for GlimmerHMM_glimmerT_53224-T1
Valid prediction for snap_scaffold_24-snap.2056-T1
Valid prediction for GlimmerHMM_glimmerT_53222-T1
Valid prediction for snap_scaffold_24-snap.2057-T1
Valid prediction for snap_scaffold_24-snap.2082-T1
Valid prediction for snap_scaffold_24-snap.2060-T1
Valid prediction for GlimmerHMM_glimmerT_53236-T1
Valid prediction for GlimmerHMM_glimmerT_53233-T1
Valid prediction for Augustus_model.g35434.t1
Valid prediction for snap_scaffold_24-snap.2067-T1
Valid prediction for snap_scaffold_24-snap.2048-T1
Valid prediction for snap_scaffold_24-snap.2072-T1
Valid prediction for Augustus_model.g35438.t1
Valid prediction for GlimmerHMM_glimmerT_53223-T1
Valid prediction for Augustus_model.g35442.t1
Valid prediction for snap_scaffold_24-snap.2081-T1
Valid prediction for Augustus_model.g35439.t1
Valid prediction for GlimmerHMM_glimmerT_53232-T1
Valid prediction for Augustus_model.g35435.t1
Valid prediction for GlimmerHMM_glimmerT_53219-T1
Valid prediction for snap_scaffold_24-snap.2071-T1
Valid prediction for snap_scaffold_24-snap.2074-T1
Valid prediction for GlimmerHMM_glimmerT_53230-T1
Valid prediction for snap_scaffold_24-snap.2085-T1
Valid prediction for snap_scaffold_24-snap.2064-T1
Valid prediction for GlimmerHMM_glimmerT_53237-T1
Valid prediction for snap_scaffold_24-snap.2058-T1
Valid prediction for GlimmerHMM_glimmerT_53231-T1
Valid prediction for GlimmerHMM_glimmerT_53238-T1
Valid prediction for Augustus_model.g35440.t1
Valid prediction for GlimmerHMM_glimmerT_53218-T1
Valid prediction for snap_scaffold_24-snap.2069-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8010, rend_intergenic: 6288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10351, rend_intergenic: 8134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12729, rend_intergenic: 10497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19104, rend_intergenic: 14601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25640, rend_intergenic: 19354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40252, rend_intergenic: 37860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43700, rend_intergenic: 40731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63882, rend_intergenic: 57444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68172, rend_intergenic: 65105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76424, rend_intergenic: 71011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82600, rend_intergenic: 76491  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88725, rend_intergenic: 86847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98783, rend_intergenic: 92142  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112269, rend_intergenic: 101917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118882, rend_intergenic: 112797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141893, rend_intergenic: 139935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144676, rend_intergenic: 142456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 146843
-exon list size: 252


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.1    
3.5    
3.9    
4.3    
4.7    
5.1    
5.5    
5.9    
6.3    
6.7    
7.1    
7.5    
7.9    
8.3    
8.7    
9.1    
9.4    
9.8    
10.2    
10.6    
11.0    
11.4    
11.8    
12.2    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.7    
16.1    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
18.9    
19.3    
19.7    
20.1    
20.5    
20.9    
21.3    
21.7    
22.0    
22.4    
22.8    
23.2    
23.6    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.4    
26.8    
27.2    
27.6    
28.0    
28.3    
28.7    
29.1    
29.5    
29.9    
30.3    
30.7    
31.1    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.9    
34.3    
34.6    
35.0    
35.4    
35.8    
36.2    
36.6    
37.0    
37.4    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.6    
40.9    
41.3    
41.7    
42.1    
42.5    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.5    
57.9    
58.3    
58.7    
59.1    
59.4    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.6    
63.0    
63.4    
63.8    
64.2    
64.6    
65.0    
65.4    
65.7    
66.1    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.9    
69.3    
69.7    
70.1    
70.5    
70.9    
71.3    
71.7    
72.0    
72.4    
72.8    
73.2    
73.6    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.4    
76.8    
77.2    
77.6    
78.0    
78.3    
78.7    
79.1    
79.5    
79.9    
80.3    
80.7    
81.1    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.9    
84.3    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.8    
88.2    
88.6    
89.0    
89.4    
89.8    
90.2    
90.6    
90.9    
91.3    
91.7    
92.1    
92.5    
92.9    
93.3    
93.7    
94.1    
94.5    
94.9    
95.3    
95.7    
96.1    
96.5    
96.9    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 8010, rend_intergenic: 6288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10351, rend_intergenic: 8134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12729, rend_intergenic: 10497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19104, rend_intergenic: 14601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25640, rend_intergenic: 19354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40252, rend_intergenic: 37860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43700, rend_intergenic: 40731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63882, rend_intergenic: 57444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68172, rend_intergenic: 65105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76424, rend_intergenic: 71011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82600, rend_intergenic: 76491  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88725, rend_intergenic: 86847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98783, rend_intergenic: 92142  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112269, rend_intergenic: 101917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118882, rend_intergenic: 112797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141893, rend_intergenic: 139935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144676, rend_intergenic: 142456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support