-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_9411251-9562695

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_53169-T1
Valid prediction for GlimmerHMM_glimmerT_53159-T1
Valid prediction for GlimmerHMM_glimmerT_53166-T1
Valid prediction for snap_scaffold_24-snap.1971-T1
Valid prediction for GlimmerHMM_glimmerT_53155-T1
Valid prediction for snap_scaffold_24-snap.1974-T1
Valid prediction for snap_scaffold_24-snap.1978-T1
Valid prediction for snap_scaffold_24-snap.1966-T1
Valid prediction for snap_scaffold_24-snap.1984-T1
Valid prediction for GlimmerHMM_glimmerT_53168-T1
Valid prediction for snap_scaffold_24-snap.2001-T1
Valid prediction for snap_scaffold_24-snap.1995-T1
Valid prediction for snap_scaffold_24-snap.2007-T1
Valid prediction for snap_scaffold_24-snap.2002-T1
Valid prediction for Augustus_model.g35404.t1
Valid prediction for snap_scaffold_24-snap.1981-T1
Valid prediction for GlimmerHMM_glimmerT_53165-T1
Valid prediction for snap_scaffold_24-snap.2005-T1
Valid prediction for Augustus_model.g35403.t1
Valid prediction for GlimmerHMM_glimmerT_53176-T1
Valid prediction for GlimmerHMM_glimmerT_53174-T1
Valid prediction for GlimmerHMM_glimmerT_53175-T1
Valid prediction for snap_scaffold_24-snap.1977-T1
Valid prediction for Augustus_model.g35399.t1
Valid prediction for Augustus_model.g35409.t1
Valid prediction for GlimmerHMM_glimmerT_53173-T1
Valid prediction for Augustus_model.g35410.t1
Valid prediction for snap_scaffold_24-snap.2003-T1
Valid prediction for Augustus_model.g35405.t1
Valid prediction for Augustus_model.g35411.t1
Valid prediction for snap_scaffold_24-snap.1970-T1
Valid prediction for Augustus_model.g35416.t1
Valid prediction for snap_scaffold_24-snap.1988-T1
Valid prediction for snap_scaffold_24-snap.1990-T1
Valid prediction for snap_scaffold_24-snap.1993-T1
Valid prediction for snap_scaffold_24-snap.1979-T1
Valid prediction for GlimmerHMM_glimmerT_53178-T1
Valid prediction for Augustus_model.g35415.t1
Valid prediction for GlimmerHMM_glimmerT_53161-T1
Valid prediction for Augustus_model.g35408.t1
Valid prediction for snap_scaffold_24-snap.1998-T1
Valid prediction for snap_scaffold_24-snap.1975-T1
Valid prediction for GlimmerHMM_glimmerT_53163-T1
Valid prediction for GlimmerHMM_glimmerT_53164-T1
Valid prediction for snap_scaffold_24-snap.1976-T1
Valid prediction for Augustus_model.g35413.t1
Valid prediction for snap_scaffold_24-snap.1997-T1
Valid prediction for snap_scaffold_24-snap.1994-T1
Valid prediction for GlimmerHMM_glimmerT_53179-T1
Valid prediction for GlimmerHMM_glimmerT_53171-T1
Valid prediction for Augustus_model.g35402.t1
Valid prediction for Augustus_model.g35414.t1
Valid prediction for snap_scaffold_24-snap.1985-T1
Valid prediction for GlimmerHMM_glimmerT_53172-T1
Valid prediction for snap_scaffold_24-snap.1967-T1
Valid prediction for GlimmerHMM_glimmerT_53158-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g35406.t1
Valid prediction for snap_scaffold_24-snap.1983-T1
Valid prediction for snap_scaffold_24-snap.1996-T1
Valid prediction for snap_scaffold_24-snap.2004-T1
Couldn't classify 31247, 31576
Sorry, prediction pasa_asmbl_32523.p1 fails validation.
(CCT)	 CG	31247-31576	TA	AAT
Valid prediction for snap_scaffold_24-snap.1969-T1
Valid prediction for snap_scaffold_24-snap.1973-T1
Valid prediction for snap_scaffold_24-snap.1982-T1
Valid prediction for GlimmerHMM_glimmerT_53160-T1
Valid prediction for GlimmerHMM_glimmerT_53167-T1
Valid prediction for snap_scaffold_24-snap.1987-T1
Valid prediction for Augustus_model.g35401.t1
Valid prediction for snap_scaffold_24-snap.1972-T1
Valid prediction for GlimmerHMM_glimmerT_53177-T1
Valid prediction for snap_scaffold_24-snap.1999-T1
Valid prediction for snap_scaffold_24-snap.1968-T1
Valid prediction for Augustus_model.g35412.t1
Valid prediction for GlimmerHMM_glimmerT_53170-T1
Valid prediction for GlimmerHMM_glimmerT_53162-T1
Valid prediction for GlimmerHMM_glimmerT_53157-T1
Valid prediction for snap_scaffold_24-snap.1992-T1
Valid prediction for snap_scaffold_24-snap.1991-T1
Valid prediction for GlimmerHMM_glimmerT_53180-T1
Valid prediction for GlimmerHMM_glimmerT_53156-T1
Valid prediction for snap_scaffold_24-snap.2006-T1
Valid prediction for snap_scaffold_24-snap.1989-T1
Valid prediction for snap_scaffold_24-snap.2000-T1
Valid prediction for snap_scaffold_24-snap.1986-T1
Valid prediction for Augustus_model.g35407.t1
Valid prediction for Augustus_model.g35400.t1
Valid prediction for snap_scaffold_24-snap.1980-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18054, rend_intergenic: 8610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26955, rend_intergenic: 22321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58969, rend_intergenic: 57054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61623, rend_intergenic: 59652  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75470, rend_intergenic: 69665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78200, rend_intergenic: 76065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89425, rend_intergenic: 84703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104647, rend_intergenic: 89445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110330, rend_intergenic: 105882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119669, rend_intergenic: 110410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130295, rend_intergenic: 124996  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140995, rend_intergenic: 138102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 151445
-exon list size: 284


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.1    
2.4    
2.8    
3.1    
3.5    
3.8    
4.2    
4.5    
4.9    
5.2    
5.6    
5.9    
6.3    
6.6    
7.0    
7.3    
7.7    
8.0    
8.4    
8.7    
9.1    
9.4    
9.8    
10.1    
10.5    
10.8    
11.2    
11.5    
11.9    
12.2    
12.6    
12.9    
13.3    
13.6    
14.0    
14.3    
14.7    
15.0    
15.4    
15.7    
16.1    
16.4    
16.8    
17.1    
17.5    
17.8    
18.2    
18.5    
18.9    
19.2    
19.6    
19.9    
20.3    
20.6    
21.0    
21.3    
21.7    
22.0    
22.4    
22.7    
23.1    
23.4    
23.8    
24.1    
24.5    
24.8    
25.2    
25.5    
25.9    
26.2    
26.6    
26.9    
27.3    
27.6    
28.0    
28.3    
28.7    
29.0    
29.4    
29.7    
30.1    
30.4    
30.8    
31.1    
31.5    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.3    
34.6    
35.0    
35.3    
35.7    
36.0    
36.4    
36.7    
37.1    
37.4    
37.8    
38.1    
38.5    
38.8    
39.2    
39.5    
39.9    
40.2    
40.6    
40.9    
41.3    
41.6    
42.0    
42.3    
42.7    
43.0    
43.4    
43.7    
44.1    
44.4    
44.8    
45.1    
45.5    
45.8    
46.2    
46.5    
46.9    
47.2    
47.6    
47.9    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.1    
52.4    
52.8    
53.1    
53.5    
53.8    
54.2    
54.5    
54.9    
55.2    
55.6    
55.9    
56.3    
56.6    
57.0    
57.3    
57.7    
58.0    
58.4    
58.7    
59.1    
59.4    
59.8    
60.1    
60.5    
60.8    
61.2    
61.5    
61.9    
62.2    
62.6    
62.9    
63.3    
63.6    
64.0    
64.3    
64.7    
65.0    
65.4    
65.7    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.5    
68.9    
69.2    
69.6    
69.9    
70.3    
70.6    
71.0    
71.3    
71.7    
72.0    
72.4    
72.7    
73.1    
73.4    
73.8    
74.1    
74.5    
74.8    
75.2    
75.5    
75.9    
76.2    
76.6    
76.9    
77.3    
77.6    
78.0    
78.3    
78.7    
79.0    
79.4    
79.7    
80.1    
80.4    
80.8    
81.1    
81.5    
81.8    
82.2    
82.5    
82.9    
83.2    
83.6    
83.9    
84.3    
84.6    
85.0    
85.3    
85.7    
86.0    
86.4    
86.7    
87.1    
87.4    
87.8    
88.1    
88.5    
88.8    
89.2    
89.5    
89.9    
90.2    
90.6    
90.9    
91.3    
91.6    
92.0    
92.3    
92.7    
93.0    
93.4    
93.7    
94.1    
94.4    
94.8    
95.1    
95.5    
95.8    
96.2    
96.5    
96.9    
97.2    
97.6    
97.9    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 18054, rend_intergenic: 8610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26955, rend_intergenic: 22321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58969, rend_intergenic: 57054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61623, rend_intergenic: 59652  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75470, rend_intergenic: 69665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78200, rend_intergenic: 76065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89425, rend_intergenic: 84703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104647, rend_intergenic: 89445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110330, rend_intergenic: 105882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119669, rend_intergenic: 110410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130295, rend_intergenic: 124996  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140995, rend_intergenic: 138102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support