-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_9213049-9413411

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.1940-T1
Valid prediction for snap_scaffold_24-snap.1943-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.1948-T1
Valid prediction for Augustus_model.g35394.t1
Valid prediction for GlimmerHMM_glimmerT_53126-T1
Valid prediction for GlimmerHMM_glimmerT_53123-T1
Valid prediction for Augustus_model.g35383.t1
Valid prediction for snap_scaffold_24-snap.1949-T1
Valid prediction for GlimmerHMM_glimmerT_53148-T1
Valid prediction for GlimmerHMM_glimmerT_53149-T1
Valid prediction for snap_scaffold_24-snap.1932-T1
Valid prediction for snap_scaffold_24-snap.1915-T1
Valid prediction for snap_scaffold_24-snap.1912-T1
Valid prediction for GlimmerHMM_glimmerT_53130-T1
Valid prediction for snap_scaffold_24-snap.1946-T1
Valid prediction for Augustus_model.g35396.t1
Valid prediction for GlimmerHMM_glimmerT_53119-T1
Valid prediction for GlimmerHMM_glimmerT_53116-T1
Valid prediction for GlimmerHMM_glimmerT_53139-T1
Valid prediction for GlimmerHMM_glimmerT_53151-T1
Valid prediction for snap_scaffold_24-snap.1958-T1
Valid prediction for snap_scaffold_24-snap.1925-T1
Valid prediction for snap_scaffold_24-snap.1941-T1
Valid prediction for snap_scaffold_24-snap.1938-T1
Valid prediction for GlimmerHMM_glimmerT_53137-T1
Valid prediction for GlimmerHMM_glimmerT_53117-T1
Valid prediction for snap_scaffold_24-snap.1916-T1
Valid prediction for snap_scaffold_24-snap.1957-T1
Valid prediction for snap_scaffold_24-snap.1959-T1
Valid prediction for snap_scaffold_24-snap.1929-T1
Valid prediction for snap_scaffold_24-snap.1913-T1
Valid prediction for snap_scaffold_24-snap.1920-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for Augustus_model.g35385.t1
Valid prediction for snap_scaffold_24-snap.1936-T1
Valid prediction for GlimmerHMM_glimmerT_53145-T1
Valid prediction for snap_scaffold_24-snap.1935-T1
Valid prediction for snap_scaffold_24-snap.1919-T1
Valid prediction for snap_scaffold_24-snap.1963-T1
Valid prediction for snap_scaffold_24-snap.1927-T1
Valid prediction for snap_scaffold_24-snap.1950-T1
Valid prediction for snap_scaffold_24-snap.1964-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g35395.t1
Valid prediction for GlimmerHMM_glimmerT_53136-T1
Valid prediction for snap_scaffold_24-snap.1934-T1
Valid prediction for snap_scaffold_24-snap.1921-T1
Valid prediction for GlimmerHMM_glimmerT_53133-T1
Valid prediction for GlimmerHMM_glimmerT_53115-T1
Valid prediction for GlimmerHMM_glimmerT_53132-T1
Valid prediction for snap_scaffold_24-snap.1931-T1
Valid prediction for snap_scaffold_24-snap.1917-T1
Valid prediction for snap_scaffold_24-snap.1918-T1
Valid prediction for Augustus_model.g35398.t1
Valid prediction for GlimmerHMM_glimmerT_53125-T1
Valid prediction for GlimmerHMM_glimmerT_53146-T1
Valid prediction for snap_scaffold_24-snap.1956-T1
Valid prediction for snap_scaffold_24-snap.1955-T1
Valid prediction for snap_scaffold_24-snap.1926-T1
Valid prediction for snap_scaffold_24-snap.1951-T1
Valid prediction for Augustus_model.g35388.t1
Valid prediction for snap_scaffold_24-snap.1942-T1
Valid prediction for GlimmerHMM_glimmerT_53118-T1
Valid prediction for snap_scaffold_24-snap.1922-T1
Valid prediction for Augustus_model.g35392.t1
Valid prediction for snap_scaffold_24-snap.1952-T1
Valid prediction for Augustus_model.g35397.t1
Valid prediction for snap_scaffold_24-snap.1930-T1
Valid prediction for GlimmerHMM_glimmerT_53138-T1
Valid prediction for GlimmerHMM_glimmerT_53142-T1
Valid prediction for GlimmerHMM_glimmerT_53143-T1
Valid prediction for snap_scaffold_24-snap.1924-T1
Valid prediction for snap_scaffold_24-snap.1939-T1
Valid prediction for snap_scaffold_24-snap.1954-T1
Valid prediction for GlimmerHMM_glimmerT_53150-T1
Valid prediction for Augustus_model.g35391.t1
Valid prediction for Augustus_model.g35386.t1
Valid prediction for snap_scaffold_24-snap.1962-T1
Valid prediction for GlimmerHMM_glimmerT_53124-T1
Valid prediction for snap_scaffold_24-snap.1923-T1
Valid prediction for snap_scaffold_24-snap.1947-T1
Valid prediction for GlimmerHMM_glimmerT_53121-T1
Valid prediction for GlimmerHMM_glimmerT_53152-T1
Valid prediction for GlimmerHMM_glimmerT_53141-T1
Valid prediction for snap_scaffold_24-snap.1953-T1
Valid prediction for GlimmerHMM_glimmerT_53135-T1
Valid prediction for GlimmerHMM_glimmerT_53120-T1
Valid prediction for GlimmerHMM_glimmerT_53147-T1
Valid prediction for GlimmerHMM_glimmerT_53127-T1
Valid prediction for snap_scaffold_24-snap.1944-T1
Valid prediction for GlimmerHMM_glimmerT_53134-T1
Valid prediction for Augustus_model.g35393.t1
Valid prediction for snap_scaffold_24-snap.1960-T1
Valid prediction for snap_scaffold_24-snap.1965-T1
Valid prediction for GlimmerHMM_glimmerT_53153-T1
Valid prediction for snap_scaffold_24-snap.1937-T1
Valid prediction for snap_scaffold_24-snap.1914-T1
Valid prediction for Augustus_model.g35384.t1
Valid prediction for snap_scaffold_24-snap.1961-T1
Valid prediction for snap_scaffold_24-snap.1945-T1
Valid prediction for GlimmerHMM_glimmerT_53140-T1
Valid prediction for Augustus_model.g35389.t1
Valid prediction for GlimmerHMM_glimmerT_53144-T1
Valid prediction for snap_scaffold_24-snap.1933-T1
Valid prediction for GlimmerHMM_glimmerT_53122-T1
Valid prediction for Augustus_model.g35390.t1
Valid prediction for GlimmerHMM_glimmerT_53128-T1
Valid prediction for GlimmerHMM_glimmerT_53131-T1
Valid prediction for GlimmerHMM_glimmerT_53154-T1
Valid prediction for GlimmerHMM_glimmerT_53129-T1
Valid prediction for snap_scaffold_24-snap.1928-T1
Valid prediction for Augustus_model.g35387.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12414, rend_intergenic: 9001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16531, rend_intergenic: 12769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24400, rend_intergenic: 21002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33887, rend_intergenic: 32360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66928, rend_intergenic: 54800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78662, rend_intergenic: 67909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85128, rend_intergenic: 80186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97742, rend_intergenic: 87303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103029, rend_intergenic: 100081  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118794, rend_intergenic: 111426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122598, rend_intergenic: 118828  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131748, rend_intergenic: 127782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144455, rend_intergenic: 133524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144919, rend_intergenic: 144577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174179, rend_intergenic: 170032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180795, rend_intergenic: 175118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198202, rend_intergenic: 195864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 200363
-exon list size: 370


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.2    
2.4    
2.7    
3.0    
3.2    
3.5    
3.8    
4.0    
4.3    
4.6    
4.8    
5.1    
5.4    
5.6    
5.9    
6.2    
6.5    
6.7    
7.0    
7.3    
7.5    
7.8    
8.1    
8.3    
8.6    
8.9    
9.1    
9.4    
9.7    
9.9    
10.2    
10.5    
10.8    
11.0    
11.3    
11.6    
11.8    
12.1    
12.4    
12.6    
12.9    
13.2    
13.4    
13.7    
14.0    
14.2    
14.5    
14.8    
15.1    
15.3    
15.6    
15.9    
16.1    
16.4    
16.7    
16.9    
17.2    
17.5    
17.7    
18.0    
18.3    
18.5    
18.8    
19.1    
19.4    
19.6    
19.9    
20.2    
20.4    
20.7    
21.0    
21.2    
21.5    
21.8    
22.0    
22.3    
22.6    
22.8    
23.1    
23.4    
23.7    
23.9    
24.2    
24.5    
24.7    
25.0    
25.3    
25.5    
25.8    
26.1    
26.3    
26.6    
26.9    
27.2    
27.4    
27.7    
28.0    
28.2    
28.5    
28.8    
29.0    
29.3    
29.6    
29.8    
30.1    
30.4    
30.6    
30.9    
31.2    
31.5    
31.7    
32.0    
32.3    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.1    
34.4    
34.7    
34.9    
35.2    
35.5    
35.8    
36.0    
36.3    
36.6    
36.8    
37.1    
37.4    
37.6    
37.9    
38.2    
38.4    
38.7    
39.0    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.1    
41.4    
41.7    
41.9    
42.2    
42.5    
42.7    
43.0    
43.3    
43.5    
43.8    
44.1    
44.4    
44.6    
44.9    
45.2    
45.4    
45.7    
46.0    
46.2    
46.5    
46.8    
47.0    
47.3    
47.6    
47.8    
48.1    
48.4    
48.7    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.3    
51.6    
51.9    
52.2    
52.4    
52.7    
53.0    
53.2    
53.5    
53.8    
54.0    
54.3    
54.6    
54.8    
55.1    
55.4    
55.6    
55.9    
56.2    
56.5    
56.7    
57.0    
57.3    
57.5    
57.8    
58.1    
58.3    
58.6    
58.9    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.0    
61.3    
61.6    
61.8    
62.1    
62.4    
62.6    
62.9    
63.2    
63.4    
63.7    
64.0    
64.2    
64.5    
64.8    
65.1    
65.3    
65.6    
65.9    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.7    
68.0    
68.3    
68.5    
68.8    
69.1    
69.4    
69.6    
69.9    
70.2    
70.4    
70.7    
71.0    
71.2    
71.5    
71.8    
72.0    
72.3    
72.6    
72.8    
73.1    
73.4    
73.7    
73.9    
74.2    
74.5    
74.7    
75.0    
75.3    
75.5    
75.8    
76.1    
76.3    
76.6    
76.9    
77.2    
77.4    
77.7    
78.0    
78.2    
78.5    
78.8    
79.0    
79.3    
79.6    
79.8    
80.1    
80.4    
80.6    
80.9    
81.2    
81.5    
81.7    
82.0    
82.3    
82.5    
82.8    
83.1    
83.3    
83.6    
83.9    
84.1    
84.4    
84.7    
84.9    
85.2    
85.5    
85.8    
86.0    
86.3    
86.6    
86.8    
87.1    
87.4    
87.6    
87.9    
88.2    
88.4    
88.7    
89.0    
89.2    
89.5    
89.8    
90.1    
90.3    
90.6    
90.9    
91.1    
91.4    
91.7    
91.9    
92.2    
92.5    
92.7    
93.0    
93.3    
93.5    
93.8    
94.1    
94.4    
94.6    
94.9    
95.2    
95.4    
95.7    
96.0    
96.2    
96.5    
96.8    
97.0    
97.3    
97.6    
97.8    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 49 predictions from path traversal
Error with prediction: snap lend_intergenic: 12414, rend_intergenic: 9001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16531, rend_intergenic: 12769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24400, rend_intergenic: 21002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33887, rend_intergenic: 32360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66928, rend_intergenic: 54800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78662, rend_intergenic: 67909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85128, rend_intergenic: 80186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97742, rend_intergenic: 87303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103029, rend_intergenic: 100081  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118794, rend_intergenic: 111426  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122598, rend_intergenic: 118828  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131748, rend_intergenic: 127782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144455, rend_intergenic: 133524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144919, rend_intergenic: 144577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174179, rend_intergenic: 170032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180795, rend_intergenic: 175118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198202, rend_intergenic: 195864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support