-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_9129472-9220186

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.1902-T1
Valid prediction for GlimmerHMM_glimmerT_53113-T1
Valid prediction for GlimmerHMM_glimmerT_53107-T1
Valid prediction for snap_scaffold_24-snap.1904-T1
Valid prediction for snap_scaffold_24-snap.1909-T1
Valid prediction for GlimmerHMM_glimmerT_53109-T1
Valid prediction for snap_scaffold_24-snap.1908-T1
Valid prediction for snap_scaffold_24-snap.1896-T1
Couldn't classify 4014, 4712
Sorry, prediction pasa_asmbl_32522.p1 fails validation.
(CTT)	 GA	4014-4712	CC	GAC
Valid prediction for Augustus_model.g35382.t1
Valid prediction for snap_scaffold_24-snap.1906-T1
Valid prediction for GlimmerHMM_glimmerT_53101-T1
Valid prediction for snap_scaffold_24-snap.1898-T1
Valid prediction for snap_scaffold_24-snap.1892-T1
Valid prediction for Augustus_model.g35380.t1
Valid prediction for GlimmerHMM_glimmerT_53114-T1
Valid prediction for Augustus_model.g35371.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.1899-T1
Valid prediction for snap_scaffold_24-snap.1897-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_53105-T1
Valid prediction for Augustus_model.g35381.t1
Valid prediction for snap_scaffold_24-snap.1894-T1
Valid prediction for GlimmerHMM_glimmerT_53110-T1
Couldn't classify 80454, 80483
Couldn't classify 81659, 81730
Sorry, prediction pasa_asmbl_33136.p1 fails validation.
(CTG)	 GG	80454-80483	GT	AAG
(GGA)	 AG	80704-80876	GT	TGG
(GTA)	 AG	81223-81340	GT	AAG
(CTT)	 AG	81659-81730	GA	GAG
-recovered pasa_asmbl_33136.p1, internal, 80704, 80876
-recovered pasa_asmbl_33136.p1, internal, 81223, 81340
Valid prediction for Augustus_model.g35379.t1
Valid prediction for GlimmerHMM_glimmerT_53102-T1
Valid prediction for GlimmerHMM_glimmerT_53106-T1
Valid prediction for Augustus_model.g35372.t1
Valid prediction for Augustus_model.g35375.t1
Valid prediction for snap_scaffold_24-snap.1901-T1
Valid prediction for GlimmerHMM_glimmerT_53112-T1
Valid prediction for Augustus_model.g35376.t1
Valid prediction for Augustus_model.g35378.t1
Valid prediction for Augustus_model.g35373.t1
Valid prediction for GlimmerHMM_glimmerT_53104-T1
Valid prediction for Augustus_model.g35377.t1
Valid prediction for snap_scaffold_24-snap.1895-T1
Valid prediction for GlimmerHMM_glimmerT_53103-T1
Valid prediction for snap_scaffold_24-snap.1910-T1
Valid prediction for snap_scaffold_24-snap.1903-T1
Valid prediction for snap_scaffold_24-snap.1900-T1
Valid prediction for snap_scaffold_24-snap.1893-T1
Valid prediction for snap_scaffold_24-snap.1905-T1
Valid prediction for snap_scaffold_24-snap.1907-T1
Valid prediction for GlimmerHMM_glimmerT_53111-T1
Valid prediction for Augustus_model.g35374.t1
Valid prediction for GlimmerHMM_glimmerT_53108-T1
Valid prediction for snap_scaffold_24-snap.1911-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 21760, rend_intergenic: 20302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28476, rend_intergenic: 24376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31730, rend_intergenic: 28901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43676, rend_intergenic: 31848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62638, rend_intergenic: 59614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72564, rend_intergenic: 70884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83546, rend_intergenic: 75468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 90715
-exon list size: 169


building trellis

0.6    
1.2    
1.8    
2.3    
2.9    
3.5    
4.1    
4.7    
5.3    
5.8    
6.4    
7.0    
7.6    
8.2    
8.8    
9.4    
9.9    
10.5    
11.1    
11.7    
12.3    
12.9    
13.5    
14.0    
14.6    
15.2    
15.8    
16.4    
17.0    
17.5    
18.1    
18.7    
19.3    
19.9    
20.5    
21.1    
21.6    
22.2    
22.8    
23.4    
24.0    
24.6    
25.1    
25.7    
26.3    
26.9    
27.5    
28.1    
28.7    
29.2    
29.8    
30.4    
31.0    
31.6    
32.2    
32.7    
33.3    
33.9    
34.5    
35.1    
35.7    
36.3    
36.8    
37.4    
38.0    
38.6    
39.2    
39.8    
40.4    
40.9    
41.5    
42.1    
42.7    
43.3    
43.9    
44.4    
45.0    
45.6    
46.2    
46.8    
47.4    
48.0    
48.5    
49.1    
49.7    
50.3    
50.9    
51.5    
52.0    
52.6    
53.2    
53.8    
54.4    
55.0    
55.6    
56.1    
56.7    
57.3    
57.9    
58.5    
59.1    
59.6    
60.2    
60.8    
61.4    
62.0    
62.6    
63.2    
63.7    
64.3    
64.9    
65.5    
66.1    
66.7    
67.3    
67.8    
68.4    
69.0    
69.6    
70.2    
70.8    
71.3    
71.9    
72.5    
73.1    
73.7    
74.3    
74.9    
75.4    
76.0    
76.6    
77.2    
77.8    
78.4    
78.9    
79.5    
80.1    
80.7    
81.3    
81.9    
82.5    
83.0    
83.6    
84.2    
84.8    
85.4    
86.0    
86.5    
87.1    
87.7    
88.3    
88.9    
89.5    
90.1    
90.6    
91.2    
91.8    
92.4    
93.0    
93.6    
94.2    
94.7    
95.3    
95.9    
96.5    
97.1    
97.7    
98.2    
98.8    
99.4    
-found 16 predictions from path traversal
Error with prediction: snap lend_intergenic: 21760, rend_intergenic: 20302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28476, rend_intergenic: 24376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31730, rend_intergenic: 28901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43676, rend_intergenic: 31848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62638, rend_intergenic: 59614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72564, rend_intergenic: 70884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83546, rend_intergenic: 75468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support