-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_836718-990240

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.202-T1
Valid prediction for snap_scaffold_24-snap.225-T1
Valid prediction for GlimmerHMM_glimmerT_51953-T1
Valid prediction for GlimmerHMM_glimmerT_51935-T1
Valid prediction for GlimmerHMM_glimmerT_51939-T1
Valid prediction for snap_scaffold_24-snap.231-T1
Valid prediction for GlimmerHMM_glimmerT_51956-T1
Valid prediction for GlimmerHMM_glimmerT_51948-T1
Valid prediction for snap_scaffold_24-snap.218-T1
Valid prediction for Augustus_model.g34628.t1
Valid prediction for snap_scaffold_24-snap.221-T1
Couldn't classify 72857, 72916
Sorry, prediction pasa_asmbl_32056.p1 fails validation.
(AAA)	 TC	72857-72916	GT	AGG
(GCT)	 AG	73292-73552	GT	GGG
(CCT)	 AG	74477-74572	GC	AAG
-recovered pasa_asmbl_32056.p1, terminal, 74477, 74572
-recovered pasa_asmbl_32056.p1, internal, 73292, 73552
-recovered pasa_asmbl_32056.p1, internal, 74477, 74572
Valid prediction for Augustus_model.g34625.t1
Valid prediction for snap_scaffold_24-snap.229-T1
Valid prediction for Augustus_model.g34624.t1
Valid prediction for GlimmerHMM_glimmerT_51955-T1
Valid prediction for GlimmerHMM_glimmerT_51937-T1
Valid prediction for Augustus_model.g34629.t1
Couldn't classify 87515, 87631
Sorry, prediction pasa_asmbl_32057.p2 fails validation.
(CTG)	 GT	87515-87631	GT	ACG
(GTC)	 AG	88943-89137	CC	GAC
-recovered pasa_asmbl_32057.p2, terminal, 88943, 89137
Valid prediction for Augustus_model.g34623.t1
Valid prediction for GlimmerHMM_glimmerT_51958-T1
Valid prediction for snap_scaffold_24-snap.227-T1
Valid prediction for snap_scaffold_24-snap.213-T1
Valid prediction for snap_scaffold_24-snap.237-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.215-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.216-T1
Valid prediction for snap_scaffold_24-snap.233-T1
Valid prediction for snap_scaffold_24-snap.211-T1
Valid prediction for GlimmerHMM_glimmerT_51950-T1
Valid prediction for snap_scaffold_24-snap.236-T1
Valid prediction for CodingQuarry_transcript_37225-T1
Valid prediction for Augustus_model.g34630.t1
Valid prediction for GlimmerHMM_glimmerT_51938-T1
Valid prediction for snap_scaffold_24-snap.208-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_51942-T1
Valid prediction for snap_scaffold_24-snap.242-T1
Valid prediction for snap_scaffold_24-snap.217-T1
Valid prediction for GlimmerHMM_glimmerT_51944-T1
Valid prediction for snap_scaffold_24-snap.203-T1
Valid prediction for snap_scaffold_24-snap.204-T1
Valid prediction for snap_scaffold_24-snap.228-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_51952-T1
Valid prediction for GlimmerHMM_glimmerT_51954-T1
Valid prediction for GlimmerHMM_glimmerT_51936-T1
Valid prediction for GlimmerHMM_glimmerT_51943-T1
Valid prediction for GlimmerHMM_glimmerT_51960-T1
Valid prediction for snap_scaffold_24-snap.209-T1
Valid prediction for snap_scaffold_24-snap.234-T1
Valid prediction for snap_scaffold_24-snap.219-T1
Valid prediction for Augustus_model.g34627.t1
Valid prediction for snap_scaffold_24-snap.222-T1
Valid prediction for snap_scaffold_24-snap.232-T1
Valid prediction for snap_scaffold_24-snap.201-T1
Valid prediction for GlimmerHMM_glimmerT_51940-T1
Valid prediction for snap_scaffold_24-snap.240-T1
Valid prediction for GlimmerHMM_glimmerT_51957-T1
Valid prediction for snap_scaffold_24-snap.238-T1
Valid prediction for snap_scaffold_24-snap.206-T1
Valid prediction for GlimmerHMM_glimmerT_51946-T1
Valid prediction for snap_scaffold_24-snap.210-T1
Valid prediction for GlimmerHMM_glimmerT_51933-T1
Valid prediction for Augustus_model.g34626.t1
Valid prediction for GlimmerHMM_glimmerT_51934-T1
Valid prediction for snap_scaffold_24-snap.207-T1
Valid prediction for snap_scaffold_24-snap.235-T1
Valid prediction for GlimmerHMM_glimmerT_51947-T1
Valid prediction for GlimmerHMM_glimmerT_51945-T1
Valid prediction for snap_scaffold_24-snap.220-T1
Valid prediction for GlimmerHMM_glimmerT_51959-T1
Valid prediction for Augustus_model.g34621.t1
Valid prediction for GlimmerHMM_glimmerT_51951-T1
Valid prediction for snap_scaffold_24-snap.224-T1
Valid prediction for snap_scaffold_24-snap.226-T1
Valid prediction for snap_scaffold_24-snap.214-T1
Valid prediction for Augustus_model.g34631.t1
Valid prediction for snap_scaffold_24-snap.223-T1
Valid prediction for GlimmerHMM_glimmerT_51949-T1
Valid prediction for GlimmerHMM_glimmerT_51941-T1
Valid prediction for snap_scaffold_24-snap.212-T1
Valid prediction for snap_scaffold_24-snap.230-T1
Valid prediction for snap_scaffold_24-snap.241-T1
Valid prediction for snap_scaffold_24-snap.205-T1
Valid prediction for Augustus_model.g34622.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6551, rend_intergenic: 6330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25464, rend_intergenic: 6776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30959, rend_intergenic: 28067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35455, rend_intergenic: 31315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38274, rend_intergenic: 36168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43542, rend_intergenic: 38884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61472, rend_intergenic: 55514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71018, rend_intergenic: 62381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89137, rend_intergenic: 74291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95460, rend_intergenic: 92307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96833, rend_intergenic: 95523  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99326, rend_intergenic: 97087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106190, rend_intergenic: 102193  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108274, rend_intergenic: 106692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113904, rend_intergenic: 110833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120212, rend_intergenic: 114061  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124741, rend_intergenic: 120759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132692, rend_intergenic: 130718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 153523
-exon list size: 309


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.3    
2.6    
2.9    
3.2    
3.5    
3.9    
4.2    
4.5    
4.8    
5.1    
5.5    
5.8    
6.1    
6.4    
6.8    
7.1    
7.4    
7.7    
8.0    
8.4    
8.7    
9.0    
9.3    
9.6    
10.0    
10.3    
10.6    
10.9    
11.3    
11.6    
11.9    
12.2    
12.5    
12.9    
13.2    
13.5    
13.8    
14.1    
14.5    
14.8    
15.1    
15.4    
15.8    
16.1    
16.4    
16.7    
17.0    
17.4    
17.7    
18.0    
18.3    
18.6    
19.0    
19.3    
19.6    
19.9    
20.3    
20.6    
20.9    
21.2    
21.5    
21.9    
22.2    
22.5    
22.8    
23.2    
23.5    
23.8    
24.1    
24.4    
24.8    
25.1    
25.4    
25.7    
26.0    
26.4    
26.7    
27.0    
27.3    
27.7    
28.0    
28.3    
28.6    
28.9    
29.3    
29.6    
29.9    
30.2    
30.5    
30.9    
31.2    
31.5    
31.8    
32.2    
32.5    
32.8    
33.1    
33.4    
33.8    
34.1    
34.4    
34.7    
35.0    
35.4    
35.7    
36.0    
36.3    
36.7    
37.0    
37.3    
37.6    
37.9    
38.3    
38.6    
38.9    
39.2    
39.5    
39.9    
40.2    
40.5    
40.8    
41.2    
41.5    
41.8    
42.1    
42.4    
42.8    
43.1    
43.4    
43.7    
44.1    
44.4    
44.7    
45.0    
45.3    
45.7    
46.0    
46.3    
46.6    
46.9    
47.3    
47.6    
47.9    
48.2    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.8    
52.1    
52.4    
52.7    
53.1    
53.4    
53.7    
54.0    
54.3    
54.7    
55.0    
55.3    
55.6    
55.9    
56.3    
56.6    
56.9    
57.2    
57.6    
57.9    
58.2    
58.5    
58.8    
59.2    
59.5    
59.8    
60.1    
60.5    
60.8    
61.1    
61.4    
61.7    
62.1    
62.4    
62.7    
63.0    
63.3    
63.7    
64.0    
64.3    
64.6    
65.0    
65.3    
65.6    
65.9    
66.2    
66.6    
66.9    
67.2    
67.5    
67.8    
68.2    
68.5    
68.8    
69.1    
69.5    
69.8    
70.1    
70.4    
70.7    
71.1    
71.4    
71.7    
72.0    
72.3    
72.7    
73.0    
73.3    
73.6    
74.0    
74.3    
74.6    
74.9    
75.2    
75.6    
75.9    
76.2    
76.5    
76.8    
77.2    
77.5    
77.8    
78.1    
78.5    
78.8    
79.1    
79.4    
79.7    
80.1    
80.4    
80.7    
81.0    
81.4    
81.7    
82.0    
82.3    
82.6    
83.0    
83.3    
83.6    
83.9    
84.2    
84.6    
84.9    
85.2    
85.5    
85.9    
86.2    
86.5    
86.8    
87.1    
87.5    
87.8    
88.1    
88.4    
88.7    
89.1    
89.4    
89.7    
90.0    
90.4    
90.7    
91.0    
91.3    
91.6    
92.0    
92.3    
92.6    
92.9    
93.2    
93.6    
93.9    
94.2    
94.5    
94.9    
95.2    
95.5    
95.8    
96.1    
96.5    
96.8    
97.1    
97.4    
97.7    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 6551, rend_intergenic: 6330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25464, rend_intergenic: 6776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30959, rend_intergenic: 28067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35455, rend_intergenic: 31315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38274, rend_intergenic: 36168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43542, rend_intergenic: 38884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61472, rend_intergenic: 55514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71018, rend_intergenic: 62381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89137, rend_intergenic: 74291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95460, rend_intergenic: 92307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96833, rend_intergenic: 95523  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99326, rend_intergenic: 97087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106190, rend_intergenic: 102193  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108274, rend_intergenic: 106692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113904, rend_intergenic: 110833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120212, rend_intergenic: 114061  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124741, rend_intergenic: 120759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132692, rend_intergenic: 130718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support