-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_8317555-8490701

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_53002-T1
Valid prediction for GlimmerHMM_glimmerT_52988-T1
Valid prediction for snap_scaffold_24-snap.1744-T1
Valid prediction for GlimmerHMM_glimmerT_53000-T1
Valid prediction for GlimmerHMM_glimmerT_52974-T1
Valid prediction for GlimmerHMM_glimmerT_53003-T1
Valid prediction for snap_scaffold_24-snap.1733-T1
Valid prediction for snap_scaffold_24-snap.1735-T1
Valid prediction for GlimmerHMM_glimmerT_52980-T1
Valid prediction for snap_scaffold_24-snap.1753-T1
Valid prediction for GlimmerHMM_glimmerT_52992-T1
Valid prediction for Augustus_model.g35291.t1
Valid prediction for snap_scaffold_24-snap.1731-T1
Valid prediction for snap_scaffold_24-snap.1738-T1
Valid prediction for GlimmerHMM_glimmerT_52989-T1
Valid prediction for GlimmerHMM_glimmerT_52987-T1
Valid prediction for snap_scaffold_24-snap.1750-T1
Valid prediction for GlimmerHMM_glimmerT_52978-T1
Valid prediction for GlimmerHMM_glimmerT_52997-T1
Valid prediction for snap_scaffold_24-snap.1757-T1
Valid prediction for GlimmerHMM_glimmerT_52982-T1
Valid prediction for GlimmerHMM_glimmerT_52990-T1
Valid prediction for GlimmerHMM_glimmerT_52996-T1
Valid prediction for snap_scaffold_24-snap.1748-T1
Valid prediction for Augustus_model.g35292.t1
Valid prediction for Augustus_model.g35295.t1
Valid prediction for snap_scaffold_24-snap.1736-T1
Valid prediction for GlimmerHMM_glimmerT_53001-T1
Valid prediction for GlimmerHMM_glimmerT_52983-T1
Valid prediction for Augustus_model.g35287.t1
Valid prediction for GlimmerHMM_glimmerT_52994-T1
Valid prediction for Augustus_model.g35290.t1
Valid prediction for snap_scaffold_24-snap.1752-T1
Valid prediction for snap_scaffold_24-snap.1741-T1
Valid prediction for GlimmerHMM_glimmerT_52976-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.1740-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.1737-T1
Valid prediction for snap_scaffold_24-snap.1730-T1
Valid prediction for snap_scaffold_24-snap.1745-T1
Valid prediction for GlimmerHMM_glimmerT_52975-T1
Valid prediction for Augustus_model.g35293.t1
Valid prediction for GlimmerHMM_glimmerT_52995-T1
Valid prediction for snap_scaffold_24-snap.1734-T1
Valid prediction for GlimmerHMM_glimmerT_52991-T1
Valid prediction for GlimmerHMM_glimmerT_52984-T1
Valid prediction for GlimmerHMM_glimmerT_52998-T1
Valid prediction for snap_scaffold_24-snap.1755-T1
Valid prediction for snap_scaffold_24-snap.1749-T1
Valid prediction for GlimmerHMM_glimmerT_52999-T1
Valid prediction for CodingQuarry_transcript_37376-T1
Valid prediction for snap_scaffold_24-snap.1754-T1
Valid prediction for snap_scaffold_24-snap.1732-T1
Valid prediction for GlimmerHMM_glimmerT_52986-T1
Valid prediction for snap_scaffold_24-snap.1751-T1
Valid prediction for Augustus_model.g35289.t1
Valid prediction for snap_scaffold_24-snap.1743-T1
Valid prediction for Augustus_model.g35296.t1
Valid prediction for GlimmerHMM_glimmerT_52979-T1
Valid prediction for Augustus_model.g35288.t1
Valid prediction for snap_scaffold_24-snap.1747-T1
Valid prediction for GlimmerHMM_glimmerT_52977-T1
Valid prediction for snap_scaffold_24-snap.1760-T1
Valid prediction for snap_scaffold_24-snap.1761-T1
Valid prediction for snap_scaffold_24-snap.1759-T1
Valid prediction for snap_scaffold_24-snap.1739-T1
Valid prediction for GlimmerHMM_glimmerT_52985-T1
Valid prediction for GlimmerHMM_glimmerT_52993-T1
Valid prediction for HiQ_model.g35294.t1
Valid prediction for snap_scaffold_24-snap.1742-T1
Valid prediction for snap_scaffold_24-snap.1756-T1
Valid prediction for GlimmerHMM_glimmerT_52981-T1
Valid prediction for snap_scaffold_24-snap.1746-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5500, rend_intergenic: 3209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19418, rend_intergenic: 7386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23191, rend_intergenic: 19498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28454, rend_intergenic: 25605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30027, rend_intergenic: 28673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36701, rend_intergenic: 30902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45806, rend_intergenic: 38665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48165, rend_intergenic: 45833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56737, rend_intergenic: 54154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75857, rend_intergenic: 56786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86275, rend_intergenic: 75877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99387, rend_intergenic: 89959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109103, rend_intergenic: 99507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134702, rend_intergenic: 124541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 83243, rend_intergenic: 83240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 173147
-exon list size: 340


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.0    
2.3    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
5.0    
5.3    
5.6    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.4    
9.6    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.0    
12.3    
12.6    
12.9    
13.2    
13.5    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.5    
15.8    
16.1    
16.4    
16.7    
17.0    
17.3    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.8    
21.1    
21.3    
21.6    
21.9    
22.2    
22.5    
22.8    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
26.0    
26.3    
26.6    
26.9    
27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
28.9    
29.2    
29.5    
29.8    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.7    
33.0    
33.3    
33.6    
33.9    
34.2    
34.5    
34.8    
35.1    
35.4    
35.7    
36.0    
36.3    
36.5    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.6    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.4    
44.7    
45.0    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.1    
47.4    
47.7    
48.0    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.0    
52.3    
52.6    
52.9    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
55.0    
55.3    
55.6    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.4    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.5    
63.7    
64.0    
64.3    
64.6    
64.9    
65.2    
65.5    
65.8    
66.1    
66.4    
66.7    
67.0    
67.3    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.2    
70.5    
70.8    
71.1    
71.3    
71.6    
71.9    
72.2    
72.5    
72.8    
73.1    
73.4    
73.7    
74.0    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.2    
77.5    
77.8    
78.1    
78.4    
78.7    
78.9    
79.2    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.7    
83.0    
83.3    
83.6    
83.9    
84.2    
84.5    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.5    
86.8    
87.1    
87.4    
87.7    
88.0    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.4    
90.6    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.4    
94.7    
95.0    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.7    
98.0    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 5500, rend_intergenic: 3209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19418, rend_intergenic: 7386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23191, rend_intergenic: 19498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28454, rend_intergenic: 25605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30027, rend_intergenic: 28673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36701, rend_intergenic: 30902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45806, rend_intergenic: 38665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48165, rend_intergenic: 45833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56737, rend_intergenic: 54154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75857, rend_intergenic: 56786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86275, rend_intergenic: 75877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99387, rend_intergenic: 89959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109103, rend_intergenic: 99507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134702, rend_intergenic: 124541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 83243, rend_intergenic: 83240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support