-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_8162076-8319388

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.1706-T1
Valid prediction for snap_scaffold_24-snap.1721-T1
Valid prediction for Augustus_model.g35280.t1
Valid prediction for Augustus_model.g35271.t1
Valid prediction for Augustus_model.g35272.t1
Valid prediction for snap_scaffold_24-snap.1698-T1
Valid prediction for Augustus_model.g35285.t1
Valid prediction for snap_scaffold_24-snap.1709-T1
Valid prediction for GlimmerHMM_glimmerT_52947-T1
Valid prediction for GlimmerHMM_glimmerT_52972-T1
Valid prediction for Augustus_model.g35283.t1
Valid prediction for Augustus_model.g35281.t1
Valid prediction for GlimmerHMM_glimmerT_52965-T1
Valid prediction for snap_scaffold_24-snap.1704-T1
Valid prediction for GlimmerHMM_glimmerT_52964-T1
Valid prediction for Augustus_model.g35286.t1
Valid prediction for snap_scaffold_24-snap.1702-T1
Valid prediction for snap_scaffold_24-snap.1729-T1
Valid prediction for snap_scaffold_24-snap.1697-T1
Valid prediction for snap_scaffold_24-snap.1715-T1
Valid prediction for snap_scaffold_24-snap.1712-T1
Valid prediction for snap_scaffold_24-snap.1717-T1
Valid prediction for snap_scaffold_24-snap.1728-T1
Valid prediction for Augustus_model.g35270.t1
Valid prediction for Augustus_model.g35279.t1
Valid prediction for Augustus_model.g35268.t1
Valid prediction for GlimmerHMM_glimmerT_52952-T1
Valid prediction for snap_scaffold_24-snap.1701-T1
Valid prediction for GlimmerHMM_glimmerT_52966-T1
Valid prediction for GlimmerHMM_glimmerT_52949-T1
Valid prediction for Augustus_model.g35269.t1
Valid prediction for snap_scaffold_24-snap.1722-T1
Valid prediction for GlimmerHMM_glimmerT_52958-T1
Valid prediction for GlimmerHMM_glimmerT_52962-T1
Valid prediction for snap_scaffold_24-snap.1700-T1
Valid prediction for GlimmerHMM_glimmerT_52956-T1
Valid prediction for snap_scaffold_24-snap.1720-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g35267.t1
Valid prediction for GlimmerHMM_glimmerT_52970-T1
Valid prediction for GlimmerHMM_glimmerT_52951-T1
Valid prediction for GlimmerHMM_glimmerT_52959-T1
Valid prediction for GlimmerHMM_glimmerT_52969-T1
Valid prediction for snap_scaffold_24-snap.1703-T1
Valid prediction for Augustus_model.g35274.t1
Valid prediction for snap_scaffold_24-snap.1708-T1
Valid prediction for GlimmerHMM_glimmerT_52950-T1
Valid prediction for GlimmerHMM_glimmerT_52963-T1
Valid prediction for CodingQuarry_transcript_37375-T1
Valid prediction for GlimmerHMM_glimmerT_52961-T1
Valid prediction for GlimmerHMM_glimmerT_52955-T1
Couldn't classify 97506, 97634
Couldn't classify 98760, 98815
Sorry, prediction pasa_asmbl_33083.p1 fails validation.
(CTG)	 GA	97506-97634	GT	AGG
(GTG)	 AG	98197-98269	GT	AGG
(GAG)	 AG	98384-98533	GT	AGG
(GGA)	 AG	98760-98815	CC	ACC
-recovered pasa_asmbl_33083.p1, internal, 98197, 98269
-recovered pasa_asmbl_33083.p1, internal, 98384, 98533
Valid prediction for GlimmerHMM_glimmerT_52954-T1
Valid prediction for Augustus_model.g35273.t1
Valid prediction for GlimmerHMM_glimmerT_52953-T1
Valid prediction for snap_scaffold_24-snap.1711-T1
Valid prediction for snap_scaffold_24-snap.1724-T1
Valid prediction for GlimmerHMM_glimmerT_52968-T1
Valid prediction for Augustus_model.g35282.t1
Couldn't classify 99590, 99604
Sorry, prediction pasa_asmbl_33082.p1 fails validation.
(GGA)	 CA	99590-99604	GT	AGG
(GCA)	 AG	99804-99922	GT	CTG
(GTT)	 AG	100080-100165	GT	CGG
(GTC)	 AG	100250-100458	GG	GAG
-recovered pasa_asmbl_33082.p1, terminal, 100250, 100458
-recovered pasa_asmbl_33082.p1, internal, 99804, 99922
-recovered pasa_asmbl_33082.p1, internal, 100080, 100165
Valid prediction for snap_scaffold_24-snap.1727-T1
Valid prediction for GlimmerHMM_glimmerT_52957-T1
Valid prediction for GlimmerHMM_glimmerT_52973-T1
Valid prediction for Augustus_model.g35275.t1
Valid prediction for GlimmerHMM_glimmerT_52960-T1
Valid prediction for GlimmerHMM_glimmerT_52967-T1
Valid prediction for Augustus_model.g35276.t1
Valid prediction for snap_scaffold_24-snap.1719-T1
Valid prediction for snap_scaffold_24-snap.1713-T1
Valid prediction for snap_scaffold_24-snap.1710-T1
Valid prediction for snap_scaffold_24-snap.1726-T1
Valid prediction for snap_scaffold_24-snap.1714-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for Augustus_model.g35284.t1
Valid prediction for snap_scaffold_24-snap.1707-T1
Valid prediction for snap_scaffold_24-snap.1718-T1
Valid prediction for snap_scaffold_24-snap.1725-T1
Valid prediction for Augustus_model.g35277.t1
Valid prediction for snap_scaffold_24-snap.1696-T1
Valid prediction for snap_scaffold_24-snap.1705-T1
Valid prediction for snap_scaffold_24-snap.1723-T1
Valid prediction for snap_scaffold_24-snap.1699-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.1716-T1
Valid prediction for GlimmerHMM_glimmerT_52971-T1
Valid prediction for GlimmerHMM_glimmerT_52948-T1
Valid prediction for Augustus_model.g35278.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 43548, rend_intergenic: 38837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51281, rend_intergenic: 50826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54484, rend_intergenic: 51934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65707, rend_intergenic: 62697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73040, rend_intergenic: 69376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73778, rend_intergenic: 73408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81659, rend_intergenic: 81018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86390, rend_intergenic: 81855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132667, rend_intergenic: 129786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 157313
-exon list size: 291


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.0    
2.4    
2.7    
3.1    
3.4    
3.8    
4.1    
4.4    
4.8    
5.1    
5.5    
5.8    
6.1    
6.5    
6.8    
7.2    
7.5    
7.8    
8.2    
8.5    
8.9    
9.2    
9.6    
9.9    
10.2    
10.6    
10.9    
11.3    
11.6    
11.9    
12.3    
12.6    
13.0    
13.3    
13.7    
14.0    
14.3    
14.7    
15.0    
15.4    
15.7    
16.0    
16.4    
16.7    
17.1    
17.4    
17.7    
18.1    
18.4    
18.8    
19.1    
19.5    
19.8    
20.1    
20.5    
20.8    
21.2    
21.5    
21.8    
22.2    
22.5    
22.9    
23.2    
23.5    
23.9    
24.2    
24.6    
24.9    
25.3    
25.6    
25.9    
26.3    
26.6    
27.0    
27.3    
27.6    
28.0    
28.3    
28.7    
29.0    
29.4    
29.7    
30.0    
30.4    
30.7    
31.1    
31.4    
31.7    
32.1    
32.4    
32.8    
33.1    
33.4    
33.8    
34.1    
34.5    
34.8    
35.2    
35.5    
35.8    
36.2    
36.5    
36.9    
37.2    
37.5    
37.9    
38.2    
38.6    
38.9    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.3    
41.6    
42.0    
42.3    
42.7    
43.0    
43.3    
43.7    
44.0    
44.4    
44.7    
45.1    
45.4    
45.7    
46.1    
46.4    
46.8    
47.1    
47.4    
47.8    
48.1    
48.5    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.5    
51.9    
52.2    
52.6    
52.9    
53.2    
53.6    
53.9    
54.3    
54.6    
54.9    
55.3    
55.6    
56.0    
56.3    
56.7    
57.0    
57.3    
57.7    
58.0    
58.4    
58.7    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.1    
61.4    
61.8    
62.1    
62.5    
62.8    
63.1    
63.5    
63.8    
64.2    
64.5    
64.8    
65.2    
65.5    
65.9    
66.2    
66.6    
66.9    
67.2    
67.6    
67.9    
68.3    
68.6    
68.9    
69.3    
69.6    
70.0    
70.3    
70.6    
71.0    
71.3    
71.7    
72.0    
72.4    
72.7    
73.0    
73.4    
73.7    
74.1    
74.4    
74.7    
75.1    
75.4    
75.8    
76.1    
76.5    
76.8    
77.1    
77.5    
77.8    
78.2    
78.5    
78.8    
79.2    
79.5    
79.9    
80.2    
80.5    
80.9    
81.2    
81.6    
81.9    
82.3    
82.6    
82.9    
83.3    
83.6    
84.0    
84.3    
84.6    
85.0    
85.3    
85.7    
86.0    
86.3    
86.7    
87.0    
87.4    
87.7    
88.1    
88.4    
88.7    
89.1    
89.4    
89.8    
90.1    
90.4    
90.8    
91.1    
91.5    
91.8    
92.2    
92.5    
92.8    
93.2    
93.5    
93.9    
94.2    
94.5    
94.9    
95.2    
95.6    
95.9    
96.2    
96.6    
96.9    
97.3    
97.6    
98.0    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 43548, rend_intergenic: 38837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51281, rend_intergenic: 50826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54484, rend_intergenic: 51934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65707, rend_intergenic: 62697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73040, rend_intergenic: 69376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73778, rend_intergenic: 73408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81659, rend_intergenic: 81018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86390, rend_intergenic: 81855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132667, rend_intergenic: 129786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support