-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_7004527-7206689

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.1423-T1
Valid prediction for snap_scaffold_24-snap.1444-T1
Valid prediction for snap_scaffold_24-snap.1432-T1
Valid prediction for GlimmerHMM_glimmerT_52783-T1
Valid prediction for GlimmerHMM_glimmerT_52756-T1
Valid prediction for snap_scaffold_24-snap.1438-T1
Valid prediction for snap_scaffold_24-snap.1442-T1
Valid prediction for pasa_asmbl_32373.p1
Valid prediction for GlimmerHMM_glimmerT_52770-T1
Valid prediction for GlimmerHMM_glimmerT_52752-T1
Valid prediction for snap_scaffold_24-snap.1418-T1
Valid prediction for snap_scaffold_24-snap.1427-T1
Valid prediction for Augustus_model.g35152.t1
Valid prediction for GlimmerHMM_glimmerT_52766-T1
Valid prediction for Augustus_model.g35154.t1
Couldn't classify 88406, 88438
Couldn't classify 89717, 89720
Sorry, prediction pasa_asmbl_32365.p1 fails validation.
(CTG)	 TC	88406-88438	GT	AGG
(GCG)	 AG	88586-88754	GT	CGG
(AGA)	 AG	88855-89044	GT	AGG
(GTA)	 AG	89266-89381	GT	AGG
(TTC)	 AG	89461-89587	GT	CAG
(CTG)	 AG	89717-89720	GC	GTG
-recovered pasa_asmbl_32365.p1, internal, 88586, 88754
-recovered pasa_asmbl_32365.p1, internal, 88855, 89044
-recovered pasa_asmbl_32365.p1, internal, 89266, 89381
-recovered pasa_asmbl_32365.p1, internal, 89461, 89587
-recovered pasa_asmbl_32365.p1, internal, 89717, 89720
Valid prediction for Augustus_model.g35145.t1
Valid prediction for GlimmerHMM_glimmerT_52760-T1
Valid prediction for CodingQuarry_transcript_37352-T1
Valid prediction for Augustus_model.g35149.t1
Couldn't classify 93825, 93974
Sorry, prediction pasa_asmbl_32368.p1 fails validation.
(TGT)	 TG	93825-93974	GT	ACG
(TGT)	 AG	94621-94743	GT	GCG
(ACC)	 AG	94912-95023	GT	GGG
(GTG)	 AG	95287-95386	GT	GTG
(GTA)	 AG	95530-95635	GT	GGG
(AGC)	 AG	96466-96689	GT	AGG
(CTC)	 AG	96841-96979	CA	GAC
-recovered pasa_asmbl_32368.p1, terminal, 96841, 96979
-recovered pasa_asmbl_32368.p1, internal, 94621, 94743
-recovered pasa_asmbl_32368.p1, internal, 94912, 95023
-recovered pasa_asmbl_32368.p1, internal, 95287, 95386
-recovered pasa_asmbl_32368.p1, internal, 95530, 95635
-recovered pasa_asmbl_32368.p1, internal, 96466, 96689
Valid prediction for snap_scaffold_24-snap.1420-T1
Valid prediction for snap_scaffold_24-snap.1449-T1
Valid prediction for pasa_asmbl_32378.p1
Valid prediction for GlimmerHMM_glimmerT_52764-T1
Valid prediction for CodingQuarry_transcript_37356-T1
Valid prediction for GlimmerHMM_glimmerT_52757-T1
Couldn't classify 90283, 90336
Couldn't classify 93244, 93280
Sorry, prediction pasa_asmbl_32661.p1 fails validation.
(TTG)	 TG	90283-90336	GT	AGG
(AAG)	 AG	90563-90695	GT	GGG
(GTC)	 AG	90850-90954	GT	ACG
(CCA)	 AG	91101-91211	GT	AGG
(GTC)	 AG	91301-91454	GT	AGG
(CTA)	 AG	93244-93280	GA	TGG
-recovered pasa_asmbl_32661.p1, internal, 90563, 90695
-recovered pasa_asmbl_32661.p1, internal, 90850, 90954
-recovered pasa_asmbl_32661.p1, internal, 91101, 91211
-recovered pasa_asmbl_32661.p1, internal, 91301, 91454
Valid prediction for snap_scaffold_24-snap.1422-T1
Valid prediction for CodingQuarry_transcript_37353-T1
Valid prediction for GlimmerHMM_glimmerT_52768-T1
Valid prediction for CodingQuarry_transcript_37351-T1
Valid prediction for HiQ_model.g35161.t1
Valid prediction for Augustus_model.g35150.t1
Valid prediction for GlimmerHMM_glimmerT_52773-T1
Valid prediction for GlimmerHMM_glimmerT_52780-T1
Valid prediction for GlimmerHMM_glimmerT_52755-T1
Valid prediction for Augustus_model.g35151.t1
Valid prediction for snap_scaffold_24-snap.1425-T1
Valid prediction for Augustus_model.g35157.t1
Valid prediction for CodingQuarry_transcript_37355-T1
Valid prediction for GlimmerHMM_glimmerT_52762-T1
Valid prediction for GlimmerHMM_glimmerT_52777-T1
Valid prediction for snap_scaffold_24-snap.1446-T1
Valid prediction for snap_scaffold_24-snap.1451-T1
Valid prediction for CodingQuarry_transcript_37357-T1
Valid prediction for snap_scaffold_24-snap.1430-T1
Valid prediction for GlimmerHMM_glimmerT_52758-T1
Valid prediction for snap_scaffold_24-snap.1416-T1
Valid prediction for Augustus_model.g35153.t1
Couldn't classify 157925, 158154
Sorry, prediction pasa_asmbl_32371.p1 fails validation.
(CGG)	 AA	157925-158154	GT	AGG
(ATG)	 AG	158312-158463	GT	AGG
(CTC)	 AG	158671-158862	GT	AGG
(GGA)	 AG	159029-159160	GT	AGG
(GTG)	 AG	159247-159506	TT	GAT
add_exon() Sorry, pasa_asmbl_32371.p1 158312-158463-initial-1 is invalid.
-recovered pasa_asmbl_32371.p1, initial, 158312, 158463
-recovered pasa_asmbl_32371.p1, terminal, 159247, 159506
-recovered pasa_asmbl_32371.p1, internal, 158312, 158463
-recovered pasa_asmbl_32371.p1, internal, 158671, 158862
-recovered pasa_asmbl_32371.p1, internal, 159029, 159160
Valid prediction for GlimmerHMM_glimmerT_52781-T1
Valid prediction for snap_scaffold_24-snap.1426-T1
Valid prediction for snap_scaffold_24-snap.1436-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.1454-T1
Valid prediction for snap_scaffold_24-snap.1447-T1
Valid prediction for CodingQuarry_transcript_37349-T1
Valid prediction for snap_scaffold_24-snap.1421-T1
Valid prediction for GlimmerHMM_glimmerT_52765-T1
Valid prediction for snap_scaffold_24-snap.1445-T1
Valid prediction for CodingQuarry_transcript_37350-T1
Valid prediction for snap_scaffold_24-snap.1440-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.1434-T1
Valid prediction for GlimmerHMM_glimmerT_52784-T1
Valid prediction for snap_scaffold_24-snap.1453-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_52761-T1
Valid prediction for pasa_asmbl_33015.p1
Valid prediction for GlimmerHMM_glimmerT_52776-T1
Valid prediction for Augustus_model.g35146.t1
Valid prediction for CodingQuarry_transcript_37354-T1
Valid prediction for snap_scaffold_24-snap.1417-T1
Valid prediction for snap_scaffold_24-snap.1437-T1
Valid prediction for snap_scaffold_24-snap.1439-T1
Valid prediction for pasa_asmbl_33013.p1
Valid prediction for snap_scaffold_24-snap.1455-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.1424-T1
Valid prediction for GlimmerHMM_glimmerT_52772-T1
Valid prediction for snap_scaffold_24-snap.1428-T1
Valid prediction for snap_scaffold_24-snap.1419-T1
Valid prediction for Augustus_model.g35147.t1
Valid prediction for snap_scaffold_24-snap.1431-T1
Valid prediction for GlimmerHMM_glimmerT_52769-T1
Valid prediction for snap_scaffold_24-snap.1433-T1
Couldn't classify 48268, 48278
Sorry, prediction pasa_asmbl_33014.p1 fails validation.
(ATG)	 CT	46155-46218	GT	TGG
(CCT)	 AG	47544-47640	GT	AGG
(TGG)	 AG	47766-47980	GT	AGG
(ACT)	 AG	48268-48278	CC	TGC
-recovered pasa_asmbl_33014.p1, initial, 46155, 46218
-recovered pasa_asmbl_33014.p1, internal, 47544, 47640
-recovered pasa_asmbl_33014.p1, internal, 47766, 47980
Valid prediction for snap_scaffold_24-snap.1452-T1
Valid prediction for Augustus_model.g35160.t1
Valid prediction for HiQ_model.g35158.t1
Valid prediction for Augustus_model.g35148.t1
Valid prediction for GlimmerHMM_glimmerT_52759-T1
Valid prediction for GlimmerHMM_glimmerT_52774-T1
Valid prediction for snap_scaffold_24-snap.1443-T1
Valid prediction for snap_scaffold_24-snap.1435-T1
Valid prediction for Augustus_model.g35155.t1
Valid prediction for snap_scaffold_24-snap.1429-T1
Valid prediction for GlimmerHMM_glimmerT_52754-T1
Valid prediction for Augustus_model.g35159.t1
Valid prediction for snap_scaffold_24-snap.1450-T1
Valid prediction for snap_scaffold_24-snap.1448-T1
Valid prediction for HiQ_model.g35156.t1
Valid prediction for GlimmerHMM_glimmerT_52771-T1
Valid prediction for GlimmerHMM_glimmerT_52763-T1
Valid prediction for GlimmerHMM_glimmerT_52775-T1
Valid prediction for snap_scaffold_24-snap.1441-T1
Valid prediction for snap_scaffold_24-snap.1415-T1
Valid prediction for GlimmerHMM_glimmerT_52779-T1
Valid prediction for GlimmerHMM_glimmerT_52778-T1
Valid prediction for GlimmerHMM_glimmerT_52753-T1
Valid prediction for GlimmerHMM_glimmerT_52782-T1
Valid prediction for GlimmerHMM_glimmerT_52767-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4565, rend_intergenic: 1912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25802, rend_intergenic: 4886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27379, rend_intergenic: 25832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34401, rend_intergenic: 27409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46240, rend_intergenic: 34929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63351, rend_intergenic: 46571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67949, rend_intergenic: 65526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87822, rend_intergenic: 85405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93286, rend_intergenic: 88288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97519, rend_intergenic: 93338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108864, rend_intergenic: 98326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127585, rend_intergenic: 118909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139192, rend_intergenic: 136863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146656, rend_intergenic: 140628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149835, rend_intergenic: 146673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155323, rend_intergenic: 149836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168459, rend_intergenic: 165818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178636, rend_intergenic: 168822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184388, rend_intergenic: 183656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201539, rend_intergenic: 195445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 202163
-exon list size: 531


building trellis

0.2    
0.4    
0.6    
0.8    
0.9    
1.1    
1.3    
1.5    
1.7    
1.9    
2.1    
2.3    
2.4    
2.6    
2.8    
3.0    
3.2    
3.4    
3.6    
3.8    
3.9    
4.1    
4.3    
4.5    
4.7    
4.9    
5.1    
5.3    
5.4    
5.6    
5.8    
6.0    
6.2    
6.4    
6.6    
6.8    
6.9    
7.1    
7.3    
7.5    
7.7    
7.9    
8.1    
8.3    
8.4    
8.6    
8.8    
9.0    
9.2    
9.4    
9.6    
9.8    
9.9    
10.1    
10.3    
10.5    
10.7    
10.9    
11.1    
11.3    
11.4    
11.6    
11.8    
12.0    
12.2    
12.4    
12.6    
12.8    
12.9    
13.1    
13.3    
13.5    
13.7    
13.9    
14.1    
14.3    
14.4    
14.6    
14.8    
15.0    
15.2    
15.4    
15.6    
15.8    
15.9    
16.1    
16.3    
16.5    
16.7    
16.9    
17.1    
17.3    
17.4    
17.6    
17.8    
18.0    
18.2    
18.4    
18.6    
18.8    
18.9    
19.1    
19.3    
19.5    
19.7    
19.9    
20.1    
20.3    
20.5    
20.6    
20.8    
21.0    
21.2    
21.4    
21.6    
21.8    
22.0    
22.1    
22.3    
22.5    
22.7    
22.9    
23.1    
23.3    
23.5    
23.6    
23.8    
24.0    
24.2    
24.4    
24.6    
24.8    
25.0    
25.1    
25.3    
25.5    
25.7    
25.9    
26.1    
26.3    
26.5    
26.6    
26.8    
27.0    
27.2    
27.4    
27.6    
27.8    
28.0    
28.1    
28.3    
28.5    
28.7    
28.9    
29.1    
29.3    
29.5    
29.6    
29.8    
30.0    
30.2    
30.4    
30.6    
30.8    
31.0    
31.1    
31.3    
31.5    
31.7    
31.9    
32.1    
32.3    
32.5    
32.6    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.0    
34.1    
34.3    
34.5    
34.7    
34.9    
35.1    
35.3    
35.5    
35.6    
35.8    
36.0    
36.2    
36.4    
36.6    
36.8    
37.0    
37.1    
37.3    
37.5    
37.7    
37.9    
38.1    
38.3    
38.5    
38.6    
38.8    
39.0    
39.2    
39.4    
39.6    
39.8    
40.0    
40.2    
40.3    
40.5    
40.7    
40.9    
41.1    
41.3    
41.5    
41.7    
41.8    
42.0    
42.2    
42.4    
42.6    
42.8    
43.0    
43.2    
43.3    
43.5    
43.7    
43.9    
44.1    
44.3    
44.5    
44.7    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
46.0    
46.2    
46.3    
46.5    
46.7    
46.9    
47.1    
47.3    
47.5    
47.7    
47.8    
48.0    
48.2    
48.4    
48.6    
48.8    
49.0    
49.2    
49.3    
49.5    
49.7    
49.9    
50.1    
50.3    
50.5    
50.7    
50.8    
51.0    
51.2    
51.4    
51.6    
51.8    
52.0    
52.2    
52.3    
52.5    
52.7    
52.9    
53.1    
53.3    
53.5    
53.7    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.3    
55.5    
55.7    
55.9    
56.1    
56.3    
56.5    
56.7    
56.8    
57.0    
57.2    
57.4    
57.6    
57.8    
58.0    
58.2    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
59.8    
60.0    
60.2    
60.4    
60.6    
60.8    
61.0    
61.2    
61.4    
61.5    
61.7    
61.9    
62.1    
62.3    
62.5    
62.7    
62.9    
63.0    
63.2    
63.4    
63.6    
63.8    
64.0    
64.2    
64.4    
64.5    
64.7    
64.9    
65.1    
65.3    
65.5    
65.7    
65.9    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.5    
67.7    
67.9    
68.1    
68.3    
68.5    
68.7    
68.9    
69.0    
69.2    
69.4    
69.6    
69.8    
70.0    
70.2    
70.4    
70.5    
70.7    
70.9    
71.1    
71.3    
71.5    
71.7    
71.9    
72.0    
72.2    
72.4    
72.6    
72.8    
73.0    
73.2    
73.4    
73.5    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.7    
77.9    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.2    
81.4    
81.6    
81.8    
82.0    
82.2    
82.4    
82.6    
82.7    
82.9    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.2    
84.4    
84.6    
84.8    
85.0    
85.2    
85.4    
85.6    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.9    
87.1    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.9    
90.1    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.7    
91.9    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.2    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.7    
94.9    
95.1    
95.3    
95.5    
95.7    
95.9    
96.1    
96.2    
96.4    
96.6    
96.8    
97.0    
97.2    
97.4    
97.6    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.1    
99.2    
99.4    
99.6    
99.8    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 4565, rend_intergenic: 1912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25802, rend_intergenic: 4886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27379, rend_intergenic: 25832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34401, rend_intergenic: 27409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46240, rend_intergenic: 34929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63351, rend_intergenic: 46571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67949, rend_intergenic: 65526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87822, rend_intergenic: 85405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93286, rend_intergenic: 88288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97519, rend_intergenic: 93338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108864, rend_intergenic: 98326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127585, rend_intergenic: 118909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139192, rend_intergenic: 136863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146656, rend_intergenic: 140628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149835, rend_intergenic: 146673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155323, rend_intergenic: 149836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168459, rend_intergenic: 165818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178636, rend_intergenic: 168822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184388, rend_intergenic: 183656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201539, rend_intergenic: 195445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support