-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_6792207-7006424 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.1376-T1 Couldn't classify 33085, 33086 Sorry, prediction CodingQuarry_transcript_37345-T1 fails validation. (ATG) GA 33085-33086 GT ATG (GCT) AG 35964-36106 GT AGG (CTA) AG 38268-38438 GT AGG (GAC) AG 38556-38726 GT GAG (GCC) AG 38840-39181 GT AGG (AGA) AG 39337-39462 GT TAG (TCT) AG 41418-41450 GT TAG (TCC) AG 41970-42210 GT AGG (GTC) AG 42552-42618 GC AAG -recovered CodingQuarry_transcript_37345-T1, terminal, 42552, 42618 -recovered CodingQuarry_transcript_37345-T1, internal, 35964, 36106 -recovered CodingQuarry_transcript_37345-T1, internal, 38268, 38438 -recovered CodingQuarry_transcript_37345-T1, internal, 38556, 38726 -recovered CodingQuarry_transcript_37345-T1, internal, 38840, 39181 -recovered CodingQuarry_transcript_37345-T1, internal, 39337, 39462 -recovered CodingQuarry_transcript_37345-T1, internal, 41418, 41450 -recovered CodingQuarry_transcript_37345-T1, internal, 41970, 42210 -recovered CodingQuarry_transcript_37345-T1, internal, 42552, 42618 Valid prediction for snap_scaffold_24-snap.1379-T1 Valid prediction for snap_scaffold_24-snap.1409-T1 Valid prediction for GlimmerHMM_glimmerT_52743-T1 Valid prediction for CodingQuarry_transcript_37346-T1 Valid prediction for GlimmerHMM_glimmerT_52748-T1 Valid prediction for GlimmerHMM_glimmerT_52726-T1 Valid prediction for GlimmerHMM_glimmerT_52733-T1 Valid prediction for snap_scaffold_24-snap.1374-T1 Valid prediction for GlimmerHMM_glimmerT_52736-T1 Valid prediction for GlimmerHMM_glimmerT_52717-T1 Valid prediction for GlimmerHMM_glimmerT_52731-T1 Valid prediction for snap_scaffold_24-snap.1387-T1 Valid prediction for snap_scaffold_24-snap.1373-T1 Valid prediction for snap_scaffold_24-snap.1372-T1 Valid prediction for snap_scaffold_24-snap.1386-T1 Valid prediction for Augustus_model.g35125.t1 Valid prediction for snap_scaffold_24-snap.1378-T1 Valid prediction for Augustus_model.g35136.t1 Valid prediction for snap_scaffold_24-snap.1406-T1 Couldn't classify 33085, 33086 Sorry, prediction CodingQuarry_transcript_37344-T1 fails validation. (ATG) GA 33085-33086 GT ATG (GCT) AG 35964-36106 GT AGG (CTA) AG 38268-38438 GT AGG (GAC) AG 38556-38726 GT GAG (GCC) AG 38840-39181 GT AGG (AGA) AG 39337-39462 GT TAG (GCC) AG 40576-40653 GT AGG (TCC) AG 41970-42210 GT AGG (GTC) AG 42552-42618 GC AAG -recovered CodingQuarry_transcript_37344-T1, terminal, 42552, 42618 -recovered CodingQuarry_transcript_37344-T1, internal, 35964, 36106 -recovered CodingQuarry_transcript_37344-T1, internal, 38268, 38438 -recovered CodingQuarry_transcript_37344-T1, internal, 38556, 38726 -recovered CodingQuarry_transcript_37344-T1, internal, 38840, 39181 -recovered CodingQuarry_transcript_37344-T1, internal, 39337, 39462 -recovered CodingQuarry_transcript_37344-T1, internal, 40576, 40653 -recovered CodingQuarry_transcript_37344-T1, internal, 41970, 42210 -recovered CodingQuarry_transcript_37344-T1, internal, 42552, 42618 Valid prediction for snap_scaffold_24-snap.1412-T1 Valid prediction for pasa_asmbl_32363.p1 Valid prediction for GlimmerHMM_glimmerT_52721-T1 Valid prediction for snap_scaffold_24-snap.1385-T1 Valid prediction for snap_scaffold_24-snap.1399-T1 Valid prediction for pasa_asmbl_32357.p1 Valid prediction for snap_scaffold_24-snap.1411-T1 Valid prediction for GlimmerHMM_glimmerT_52746-T1 Valid prediction for GlimmerHMM_glimmerT_52718-T1 Valid prediction for snap_scaffold_24-snap.1404-T1 Valid prediction for GlimmerHMM_glimmerT_52720-T1 Valid prediction for snap_scaffold_24-snap.1403-T1 Valid prediction for HiQ_model.g35126.t1 Valid prediction for snap_scaffold_24-snap.1384-T1 Couldn't classify 24890, 24953 Couldn't classify 26023, 26029 Sorry, prediction pasa_asmbl_32343.p1 fails validation. (AAT) CG 24890-24953 GT CGG (TCC) AG 25129-25244 GT AGG (CTG) AG 25330-25435 GT AAG (TTT) AG 25526-25658 GT AGG (TGT) AG 25778-25852 GT AGG (CTA) AG 26023-26029 AC GTA -recovered pasa_asmbl_32343.p1, internal, 25129, 25244 -recovered pasa_asmbl_32343.p1, internal, 25330, 25435 -recovered pasa_asmbl_32343.p1, internal, 25526, 25658 -recovered pasa_asmbl_32343.p1, internal, 25778, 25852 Valid prediction for GlimmerHMM_glimmerT_52719-T1 Valid prediction for snap_scaffold_24-snap.1402-T1 Couldn't classify 33085, 33086 Sorry, prediction CodingQuarry_transcript_37343-T1 fails validation. (ATG) GA 33085-33086 GT ATG (GCT) AG 35964-36106 GT AGG (CTA) AG 38268-38438 GT AGG (GAC) AG 38556-38726 GT GAG (GCC) AG 38840-39181 GT AGG (AGA) AG 39337-39462 GT TAG (GCC) AG 40576-40653 GT AGG (TCT) AG 41418-41450 GT TAG (TCC) AG 41970-42210 GT AGG (GTC) AG 42552-42618 GC AAG -recovered CodingQuarry_transcript_37343-T1, terminal, 42552, 42618 -recovered CodingQuarry_transcript_37343-T1, internal, 35964, 36106 -recovered CodingQuarry_transcript_37343-T1, internal, 38268, 38438 -recovered CodingQuarry_transcript_37343-T1, internal, 38556, 38726 -recovered CodingQuarry_transcript_37343-T1, internal, 38840, 39181 -recovered CodingQuarry_transcript_37343-T1, internal, 39337, 39462 -recovered CodingQuarry_transcript_37343-T1, internal, 40576, 40653 -recovered CodingQuarry_transcript_37343-T1, internal, 41418, 41450 -recovered CodingQuarry_transcript_37343-T1, internal, 41970, 42210 -recovered CodingQuarry_transcript_37343-T1, internal, 42552, 42618 Valid prediction for GlimmerHMM_glimmerT_52716-T1 Valid prediction for GlimmerHMM_glimmerT_52737-T1 Valid prediction for snap_scaffold_24-snap.1407-T1 Valid prediction for GlimmerHMM_glimmerT_52750-T1 Valid prediction for snap_scaffold_24-snap.1389-T1 Valid prediction for snap_scaffold_24-snap.1395-T1 Valid prediction for CodingQuarry_transcript_37347-T1 Valid prediction for Augustus_model.g35124.t1 Valid prediction for snap_scaffold_24-snap.1410-T1 Couldn't classify 109463, 109517 Sorry, prediction pasa_asmbl_32359.p1 fails validation. (GCG) CT 109463-109517 GT AAG (GCT) AG 111007-111077 GT TGG (AAC) AG 111232-111271 GT AGG (CCT) AG 111644-111731 GT AGG (TCT) AG 112043-112131 GT AGG (GCT) AG 112244-112314 GT ATG (GTA) AG 112442-112533 GT CAG (GTG) AG 112692-112800 GT GGG (GAA) AG 112932-113036 GT AGG (CAA) AG 113168-113270 GT CTG (GGC) AG 113400-113455 TC AGT -recovered pasa_asmbl_32359.p1, terminal, 113400, 113455 -recovered pasa_asmbl_32359.p1, internal, 111007, 111077 -recovered pasa_asmbl_32359.p1, internal, 111232, 111271 -recovered pasa_asmbl_32359.p1, internal, 111644, 111731 -recovered pasa_asmbl_32359.p1, internal, 112043, 112131 -recovered pasa_asmbl_32359.p1, internal, 112244, 112314 -recovered pasa_asmbl_32359.p1, internal, 112442, 112533 -recovered pasa_asmbl_32359.p1, internal, 112692, 112800 -recovered pasa_asmbl_32359.p1, internal, 112932, 113036 -recovered pasa_asmbl_32359.p1, internal, 113168, 113270 Valid prediction for Augustus_model.g35141.t1 Valid prediction for Augustus_model.g35135.t1 Couldn't classify 31327, 31476 Sorry, prediction pasa_asmbl_32344.p1 fails validation. (ATG) TC 26163-26185 GT AGG (ACT) AG 26303-26387 GT GGG (GTT) AG 26527-26634 GT AGG (CTG) AG 27013-27183 GT AGG (GAA) AG 27500-27564 GT AGG (TCC) AG 27817-27859 GT AGG (GGG) AG 27979-28055 GT AGG (TGG) AG 28269-28369 GT AGG (ATG) AG 28461-28512 GT CAG (AGT) AG 28659-28714 GT AGG (CCA) AG 28818-28864 GT AGG (ATG) AG 29000-29056 GT AGG (AAC) AG 29137-29193 GT AGG (TAC) AG 29274-29367 GT AGG (AGA) AG 29500-29597 GT CGG (GAG) AG 29887-29948 GT AGG (TCG) AG 30077-30118 GT CTG (GTG) AG 30268-30369 GT AGG (GTC) AG 30508-30588 GT CAG (TAC) AG 30696-30866 GT AGG (GTT) AG 31035-31158 GT TGG (GTG) AG 31327-31476 GG TGG -recovered pasa_asmbl_32344.p1, initial, 26163, 26185 add_exon() Sorry, pasa_asmbl_32344.p1 28461-28512-initial-1 is invalid. -recovered pasa_asmbl_32344.p1, initial, 28461, 28512 -recovered pasa_asmbl_32344.p1, initial, 29000, 29056 add_exon() Sorry, pasa_asmbl_32344.p1 28659-28714-terminal-2 is invalid. -recovered pasa_asmbl_32344.p1, terminal, 28659, 28714 -recovered pasa_asmbl_32344.p1, internal, 26303, 26387 -recovered pasa_asmbl_32344.p1, internal, 26527, 26634 -recovered pasa_asmbl_32344.p1, internal, 27013, 27183 -recovered pasa_asmbl_32344.p1, internal, 27500, 27564 -recovered pasa_asmbl_32344.p1, internal, 27817, 27859 -recovered pasa_asmbl_32344.p1, internal, 27979, 28055 -recovered pasa_asmbl_32344.p1, internal, 28269, 28369 -recovered pasa_asmbl_32344.p1, internal, 28461, 28512 -recovered pasa_asmbl_32344.p1, internal, 28659, 28714 -recovered pasa_asmbl_32344.p1, internal, 28818, 28864 -recovered pasa_asmbl_32344.p1, internal, 29000, 29056 -recovered pasa_asmbl_32344.p1, internal, 29137, 29193 -recovered pasa_asmbl_32344.p1, internal, 29274, 29367 -recovered pasa_asmbl_32344.p1, internal, 29500, 29597 -recovered pasa_asmbl_32344.p1, internal, 29887, 29948 -recovered pasa_asmbl_32344.p1, internal, 30077, 30118 -recovered pasa_asmbl_32344.p1, internal, 30268, 30369 -recovered pasa_asmbl_32344.p1, internal, 30508, 30588 -recovered pasa_asmbl_32344.p1, internal, 30696, 30866 -recovered pasa_asmbl_32344.p1, internal, 31035, 31158 Valid prediction for snap_scaffold_24-snap.1380-T1 Valid prediction for snap_scaffold_24-snap.1381-T1 Valid prediction for HiQ_model.g35123.t1 Valid prediction for GlimmerHMM_glimmerT_52739-T1 Valid prediction for HiQ_model.g35130.t1 Valid prediction for HiQ_model.g35132.t1 Valid prediction for snap_scaffold_24-snap.1393-T1 Valid prediction for HiQ_model.g35139.t1 Couldn't classify 33085, 33086 Sorry, prediction CodingQuarry_transcript_37342-T1 fails validation. (ATG) GA 33085-33086 GT ATG (GCT) AG 35964-36106 GT AGG (CTA) AG 38268-38438 GT AGG (GAC) AG 38556-38726 GT GAG (GCC) AG 38840-39181 GT AGG (AGA) AG 39337-39713 GC AGG -recovered CodingQuarry_transcript_37342-T1, terminal, 39337, 39713 -recovered CodingQuarry_transcript_37342-T1, internal, 35964, 36106 -recovered CodingQuarry_transcript_37342-T1, internal, 38268, 38438 -recovered CodingQuarry_transcript_37342-T1, internal, 38556, 38726 -recovered CodingQuarry_transcript_37342-T1, internal, 38840, 39181 -recovered CodingQuarry_transcript_37342-T1, internal, 39337, 39713 Valid prediction for snap_scaffold_24-snap.1414-T1 Valid prediction for snap_scaffold_24-snap.1383-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_52751-T1 Couldn't classify 141590, 141666 Couldn't classify 142359, 142397 Sorry, prediction pasa_asmbl_32995.p1 fails validation. (AGG) GC 141590-141666 GT ACG (GGC) AG 141815-141987 GT AGG (TTC) AG 142094-142254 GT AGG (GCC) AG 142359-142397 AA ACA -recovered pasa_asmbl_32995.p1, internal, 141815, 141987 -recovered pasa_asmbl_32995.p1, internal, 142094, 142254 Valid prediction for HiQ_model.g35140.t1 Valid prediction for snap_scaffold_24-snap.1392-T1 Valid prediction for Augustus_model.g35129.t1 Valid prediction for HiQ_model.g35121.t1 Couldn't classify 96834, 97625 Sorry, prediction pasa_asmbl_32999.p1 fails validation. (GAT) AA 96834-97625 GT ACG Valid prediction for snap_scaffold_24-snap.1390-T1 Couldn't classify 132786, 132823 Couldn't classify 133896, 134130 Sorry, prediction pasa_asmbl_32996.p1 fails validation. (CTG) TT 132786-132823 GT GGG (GTA) AG 133666-133746 GT AAG (GTT) AG 133896-134130 TG TGT -recovered pasa_asmbl_32996.p1, internal, 133666, 133746 Couldn't classify 147885, 148023 Couldn't classify 149196, 149342 Sorry, prediction pasa_asmbl_32993.p1 fails validation. (TGG) AG 147885-148023 GT AGG (GTT) AG 148116-148384 GT AGG (CTC) AG 148491-148631 GT AGG (AGT) AG 149196-149342 CC ATC -recovered pasa_asmbl_32993.p1, internal, 147885, 148023 -recovered pasa_asmbl_32993.p1, internal, 148116, 148384 -recovered pasa_asmbl_32993.p1, internal, 148491, 148631 Valid prediction for snap_scaffold_24-snap.1398-T1 Valid prediction for snap_scaffold_24-snap.1377-T1 Couldn't classify 32549, 32584 Couldn't classify 33152, 33439 Sorry, prediction pasa_asmbl_33010.p1 fails validation. (CTC) GC 32549-32584 GT AGG (ACC) AG 33152-33439 GA GTG Couldn't classify 142615, 142754 Couldn't classify 147347, 147554 Sorry, prediction pasa_asmbl_32994.p1 fails validation. (TGT) GC 142615-142754 GT AGG (GGA) AG 143228-143327 GT AGG (ATC) AG 143441-143609 GT AGG (AGG) AG 143768-144048 GT AGG (TAT) AG 144210-144350 GT ACG (GTC) AG 144498-144751 GT AGG (TTA) AG 144980-145092 GT GAG (GTG) AG 145175-145325 GT AGG (GTG) AG 145513-145616 GT AGG (GGT) AG 145737-145919 GT AGG (GAG) AG 146114-146327 GT AGG (GAA) AG 146638-146759 GT TGG (GTT) AG 146880-147067 GT AGG (GGC) AG 147173-147267 GT AAG (AGC) AG 147347-147554 CG ACC add_exon() Sorry, pasa_asmbl_32994.p1 145513-145616-terminal-2 is invalid. -recovered pasa_asmbl_32994.p1, terminal, 145513, 145616 -recovered pasa_asmbl_32994.p1, internal, 143228, 143327 -recovered pasa_asmbl_32994.p1, internal, 143441, 143609 -recovered pasa_asmbl_32994.p1, internal, 143768, 144048 -recovered pasa_asmbl_32994.p1, internal, 144210, 144350 -recovered pasa_asmbl_32994.p1, internal, 144498, 144751 -recovered pasa_asmbl_32994.p1, internal, 144980, 145092 -recovered pasa_asmbl_32994.p1, internal, 145175, 145325 -recovered pasa_asmbl_32994.p1, internal, 145513, 145616 -recovered pasa_asmbl_32994.p1, internal, 145737, 145919 -recovered pasa_asmbl_32994.p1, internal, 146114, 146327 -recovered pasa_asmbl_32994.p1, internal, 146638, 146759 -recovered pasa_asmbl_32994.p1, internal, 146880, 147067 -recovered pasa_asmbl_32994.p1, internal, 147173, 147267 Valid prediction for GlimmerHMM_glimmerT_52734-T1 Valid prediction for CodingQuarry_transcript_37348-T1 Couldn't classify 68029, 68081 Sorry, prediction pasa_asmbl_33005.p1 fails validation. (GAA) GT 68029-68081 GT CGG (CAT) AG 68417-68614 GT AGG (CGG) AG 70075-70153 GT AGG (AAA) AG 70356-70457 CA GAC -recovered pasa_asmbl_33005.p1, terminal, 70356, 70457 -recovered pasa_asmbl_33005.p1, internal, 68417, 68614 -recovered pasa_asmbl_33005.p1, internal, 70075, 70153 Valid prediction for Augustus_model.g35142.t1 Couldn't classify 94629, 94985 Sorry, prediction pasa_asmbl_32633.p1 fails validation. (ATG) GA 94629-94985 GG TGG Couldn't classify 203352, 203416 Couldn't classify 209313, 209349 Sorry, prediction pasa_asmbl_32979.p1 fails validation. (GTG) CA 203352-203416 GT AGG (GTG) AG 204559-204734 GT AGG (GAG) AG 204971-205037 GT CAG (GGT) AG 205463-205571 GT GGG (ATG) AG 205668-205736 GT AGG (GAG) AG 206506-206647 GT GAG (AGC) AG 206762-206785 GT AGG (AGG) AG 207134-207253 GT AGG (CAG) AG 207482-207911 GT CTG (AGA) AG 209313-209349 TA GGT -recovered pasa_asmbl_32979.p1, initial, 205668, 205736 -recovered pasa_asmbl_32979.p1, internal, 204559, 204734 -recovered pasa_asmbl_32979.p1, internal, 204971, 205037 -recovered pasa_asmbl_32979.p1, internal, 205463, 205571 -recovered pasa_asmbl_32979.p1, internal, 205668, 205736 -recovered pasa_asmbl_32979.p1, internal, 206506, 206647 -recovered pasa_asmbl_32979.p1, internal, 206762, 206785 -recovered pasa_asmbl_32979.p1, internal, 207134, 207253 -recovered pasa_asmbl_32979.p1, internal, 207482, 207911 Valid prediction for snap_scaffold_24-snap.1400-T1 Sorry, intron length (9) is less than minimum required (10) Couldn't classify 192329, 192955 Sorry, prediction pasa_asmbl_32986.p1 fails validation. (CTG) AG 192329-192955 TC GCT Valid prediction for GlimmerHMM_glimmerT_52722-T1 Valid prediction for GlimmerHMM_glimmerT_52728-T1 Valid prediction for GlimmerHMM_glimmerT_52714-T1 Valid prediction for GlimmerHMM_glimmerT_52742-T1 Valid prediction for GlimmerHMM_glimmerT_52729-T1 Valid prediction for snap_scaffold_24-snap.1391-T1 Valid prediction for snap_scaffold_24-snap.1371-T1 Valid prediction for GlimmerHMM_glimmerT_52730-T1 Couldn't classify 53114, 53203 Sorry, prediction pasa_asmbl_33009.p1 fails validation. (ATG) CC 49175-49294 GT AGG (GCG) AG 50744-50878 GT AGG (GTG) AG 53114-53203 AG AAA -recovered pasa_asmbl_33009.p1, initial, 49175, 49294 -recovered pasa_asmbl_33009.p1, internal, 50744, 50878 Couldn't classify 137849, 137952 Couldn't classify 140832, 140943 Sorry, prediction pasa_asmbl_33286.p1 fails validation. (AAC) AG 137849-137952 GT AGG (TCG) AG 138165-138273 GT AGG (GAA) AG 138384-138470 GT AGG (AGG) AG 138718-138889 GT AGG (GTA) AG 139002-139134 GT ACG (GGG) AG 139226-139333 GT AAG (ACT) AG 139537-139774 GT AGG (GCG) AG 139898-140071 GT AGG (GGG) AG 140169-140255 GT AGG (ACC) AG 140416-140684 GT AAG (TCC) AG 140832-140943 TC CGT add_exon() Sorry, pasa_asmbl_33286.p1 138718-138889-terminal-3 is invalid. -recovered pasa_asmbl_33286.p1, terminal, 138718, 138889 -recovered pasa_asmbl_33286.p1, internal, 137849, 137952 -recovered pasa_asmbl_33286.p1, internal, 138165, 138273 -recovered pasa_asmbl_33286.p1, internal, 138384, 138470 -recovered pasa_asmbl_33286.p1, internal, 138718, 138889 -recovered pasa_asmbl_33286.p1, internal, 139002, 139134 -recovered pasa_asmbl_33286.p1, internal, 139226, 139333 -recovered pasa_asmbl_33286.p1, internal, 139537, 139774 -recovered pasa_asmbl_33286.p1, internal, 139898, 140071 -recovered pasa_asmbl_33286.p1, internal, 140169, 140255 -recovered pasa_asmbl_33286.p1, internal, 140416, 140684 Valid prediction for snap_scaffold_24-snap.1405-T1 Valid prediction for snap_scaffold_24-snap.1375-T1 Valid prediction for GlimmerHMM_glimmerT_52740-T1 Valid prediction for Augustus_model.g35143.t1 Valid prediction for Augustus_model.g35137.t1 Valid prediction for snap_scaffold_24-snap.1396-T1 Valid prediction for GlimmerHMM_glimmerT_52725-T1 Valid prediction for GlimmerHMM_glimmerT_52715-T1 Valid prediction for GlimmerHMM_glimmerT_52747-T1 Valid prediction for snap_scaffold_24-snap.1394-T1 Valid prediction for Augustus_model.g35131.t1 Valid prediction for GlimmerHMM_glimmerT_52738-T1 Valid prediction for snap_scaffold_24-snap.1408-T1 Valid prediction for GlimmerHMM_glimmerT_52744-T1 Valid prediction for GlimmerHMM_glimmerT_52732-T1 Valid prediction for Augustus_model.g35127.t1 Valid prediction for HiQ_model.g35144.t1 Couldn't classify 1858, 2006 Sorry, prediction pasa_asmbl_33011.p1 fails validation. (ATG) AC 806-1619 GT AGG (GGG) AG 1858-2006 GG CCG -recovered pasa_asmbl_33011.p1, initial, 806, 1619 Couldn't classify 55802, 55983 Sorry, prediction pasa_asmbl_33008.p1 fails validation. (ATG) GC 54640-54823 GT AGG (TTT) AG 55802-55983 AG GGA -recovered pasa_asmbl_33008.p1, initial, 54640, 54823 Valid prediction for HiQ_model.g35134.t1 Couldn't classify 96330, 96755 Sorry, prediction pasa_asmbl_33000.p1 fails validation. (GAA) AG 96330-96755 GC GAG -recovered pasa_asmbl_33000.p1, internal, 96330, 96755 Couldn't classify 157266, 157418 Sorry, prediction pasa_asmbl_32989.p1 fails validation. (CAG) TC 157266-157418 GT CGG (CTG) AG 157606-157704 GT AGG (TGG) AG 158287-158355 GT AGG (GAG) AG 159575-159685 GT AGG (GTG) AG 160204-160397 GT AGG (GTC) AG 160727-160952 GA GAG -recovered pasa_asmbl_32989.p1, terminal, 160727, 160952 -recovered pasa_asmbl_32989.p1, internal, 157606, 157704 -recovered pasa_asmbl_32989.p1, internal, 158287, 158355 -recovered pasa_asmbl_32989.p1, internal, 159575, 159685 -recovered pasa_asmbl_32989.p1, internal, 160204, 160397 Valid prediction for Augustus_model.g35138.t1 Valid prediction for snap_scaffold_24-snap.1397-T1 Valid prediction for GlimmerHMM_glimmerT_52745-T1 Valid prediction for snap_scaffold_24-snap.1401-T1 Valid prediction for GlimmerHMM_glimmerT_52724-T1 Valid prediction for GlimmerHMM_glimmerT_52749-T1 Valid prediction for pasa_asmbl_33002.p1 Valid prediction for Augustus_model.g35133.t1 Valid prediction for snap_scaffold_24-snap.1388-T1 Couldn't classify 149536, 149697 Couldn't classify 155005, 155319 Sorry, prediction pasa_asmbl_32991.p1 fails validation. (ACG) AG 149536-149697 GT AGG (AGG) AG 149825-149899 GT CTG (GTT) AG 150034-150210 GT AGG (GGG) AG 150848-151048 GT TCG (ATG) AG 152689-152865 GT AGG (GAC) AG 155005-155319 AG CCA -recovered pasa_asmbl_32991.p1, initial, 152689, 152865 -recovered pasa_asmbl_32991.p1, internal, 149536, 149697 -recovered pasa_asmbl_32991.p1, internal, 149825, 149899 -recovered pasa_asmbl_32991.p1, internal, 150034, 150210 -recovered pasa_asmbl_32991.p1, internal, 150848, 151048 -recovered pasa_asmbl_32991.p1, internal, 152689, 152865 Valid prediction for GlimmerHMM_glimmerT_52735-T1 Valid prediction for GlimmerHMM_glimmerT_52723-T1 Valid prediction for GlimmerHMM_glimmerT_52727-T1 Valid prediction for Augustus_model.g35128.t1 Valid prediction for Augustus_model.g35122.t1 Valid prediction for snap_scaffold_24-snap.1382-T1 Valid prediction for GlimmerHMM_glimmerT_52741-T1 Valid prediction for snap_scaffold_24-snap.1413-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 24385, rend_intergenic: 7756 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 31557, rend_intergenic: 28040 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37478, rend_intergenic: 34059 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42918, rend_intergenic: 37508 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63534, rend_intergenic: 53267 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93052, rend_intergenic: 64827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96511, rend_intergenic: 93450 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97079, rend_intergenic: 96627 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100514, rend_intergenic: 97362 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113455, rend_intergenic: 110572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114468, rend_intergenic: 113894 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 116772, rend_intergenic: 114512 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135683, rend_intergenic: 129177 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149741, rend_intergenic: 135735 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155867, rend_intergenic: 150820 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165074, rend_intergenic: 157290 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198620, rend_intergenic: 165366 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202088, rend_intergenic: 198636 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213374, rend_intergenic: 202187 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 214218 -exon list size: 621 building trellis 0.2 0.3 0.5 0.6 0.8 1.0 1.1 1.3 1.4 1.6 1.8 1.9 2.1 2.2 2.4 2.6 2.7 2.9 3.0 3.2 3.4 3.5 3.7 3.9 4.0 4.2 4.3 4.5 4.7 4.8 5.0 5.1 5.3 5.5 5.6 5.8 5.9 6.1 6.3 6.4 6.6 6.7 6.9 7.1 7.2 7.4 7.5 7.7 7.9 8.0 8.2 8.3 8.5 8.7 8.8 9.0 9.1 9.3 9.5 9.6 9.8 10.0 10.1 10.3 10.4 10.6 10.8 10.9 11.1 11.2 11.4 11.6 11.7 11.9 12.0 12.2 12.4 12.5 12.7 12.8 13.0 13.2 13.3 13.5 13.6 13.8 14.0 14.1 14.3 14.4 14.6 14.8 14.9 15.1 15.2 15.4 15.6 15.7 15.9 16.1 16.2 16.4 16.5 16.7 16.9 17.0 17.2 17.3 17.5 17.7 17.8 18.0 18.1 18.3 18.5 18.6 18.8 18.9 19.1 19.3 19.4 19.6 19.7 19.9 20.1 20.2 20.4 20.5 20.7 20.9 21.0 21.2 21.3 21.5 21.7 21.8 22.0 22.2 22.3 22.5 22.6 22.8 23.0 23.1 23.3 23.4 23.6 23.8 23.9 24.1 24.2 24.4 24.6 24.7 24.9 25.0 25.2 25.4 25.5 25.7 25.8 26.0 26.2 26.3 26.5 26.6 26.8 27.0 27.1 27.3 27.4 27.6 27.8 27.9 28.1 28.3 28.4 28.6 28.7 28.9 29.1 29.2 29.4 29.5 29.7 29.9 30.0 30.2 30.3 30.5 30.7 30.8 31.0 31.1 31.3 31.5 31.6 31.8 31.9 32.1 32.3 32.4 32.6 32.7 32.9 33.1 33.2 33.4 33.5 33.7 33.9 34.0 34.2 34.3 34.5 34.7 34.8 35.0 35.2 35.3 35.5 35.6 35.8 36.0 36.1 36.3 36.4 36.6 36.8 36.9 37.1 37.2 37.4 37.6 37.7 37.9 38.0 38.2 38.4 38.5 38.7 38.8 39.0 39.2 39.3 39.5 39.6 39.8 40.0 40.1 40.3 40.4 40.6 40.8 40.9 41.1 41.3 41.4 41.6 41.7 41.9 42.1 42.2 42.4 42.5 42.7 42.9 43.0 43.2 43.3 43.5 43.7 43.8 44.0 44.1 44.3 44.5 44.6 44.8 44.9 45.1 45.3 45.4 45.6 45.7 45.9 46.1 46.2 46.4 46.5 46.7 46.9 47.0 47.2 47.4 47.5 47.7 47.8 48.0 48.2 48.3 48.5 48.6 48.8 49.0 49.1 49.3 49.4 49.6 49.8 49.9 50.1 50.2 50.4 50.6 50.7 50.9 51.0 51.2 51.4 51.5 51.7 51.8 52.0 52.2 52.3 52.5 52.6 52.8 53.0 53.1 53.3 53.5 53.6 53.8 53.9 54.1 54.3 54.4 54.6 54.7 54.9 55.1 55.2 55.4 55.5 55.7 55.9 56.0 56.2 56.3 56.5 56.7 56.8 57.0 57.1 57.3 57.5 57.6 57.8 57.9 58.1 58.3 58.4 58.6 58.7 58.9 59.1 59.2 59.4 59.6 59.7 59.9 60.0 60.2 60.4 60.5 60.7 60.8 61.0 61.2 61.3 61.5 61.6 61.8 62.0 62.1 62.3 62.4 62.6 62.8 62.9 63.1 63.2 63.4 63.6 63.7 63.9 64.0 64.2 64.4 64.5 64.7 64.8 65.0 65.2 65.3 65.5 65.7 65.8 66.0 66.1 66.3 66.5 66.6 66.8 66.9 67.1 67.3 67.4 67.6 67.7 67.9 68.1 68.2 68.4 68.5 68.7 68.9 69.0 69.2 69.3 69.5 69.7 69.8 70.0 70.1 70.3 70.5 70.6 70.8 70.9 71.1 71.3 71.4 71.6 71.7 71.9 72.1 72.2 72.4 72.6 72.7 72.9 73.0 73.2 73.4 73.5 73.7 73.8 74.0 74.2 74.3 74.5 74.6 74.8 75.0 75.1 75.3 75.4 75.6 75.8 75.9 76.1 76.2 76.4 76.6 76.7 76.9 77.0 77.2 77.4 77.5 77.7 77.8 78.0 78.2 78.3 78.5 78.7 78.8 79.0 79.1 79.3 79.5 79.6 79.8 79.9 80.1 80.3 80.4 80.6 80.7 80.9 81.1 81.2 81.4 81.5 81.7 81.9 82.0 82.2 82.3 82.5 82.7 82.8 83.0 83.1 83.3 83.5 83.6 83.8 83.9 84.1 84.3 84.4 84.6 84.8 84.9 85.1 85.2 85.4 85.6 85.7 85.9 86.0 86.2 86.4 86.5 86.7 86.8 87.0 87.2 87.3 87.5 87.6 87.8 88.0 88.1 88.3 88.4 88.6 88.8 88.9 89.1 89.2 89.4 89.6 89.7 89.9 90.0 90.2 90.4 90.5 90.7 90.9 91.0 91.2 91.3 91.5 91.7 91.8 92.0 92.1 92.3 92.5 92.6 92.8 92.9 93.1 93.3 93.4 93.6 93.7 93.9 94.1 94.2 94.4 94.5 94.7 94.9 95.0 95.2 95.3 95.5 95.7 95.8 96.0 96.1 96.3 96.5 96.6 96.8 97.0 97.1 97.3 97.4 97.6 97.8 97.9 98.1 98.2 98.4 98.6 98.7 98.9 99.0 99.2 99.4 99.5 99.7 99.8 -found 36 predictions from path traversal Error with prediction: snap lend_intergenic: 24385, rend_intergenic: 7756 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 31557, rend_intergenic: 28040 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37478, rend_intergenic: 34059 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42918, rend_intergenic: 37508 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63534, rend_intergenic: 53267 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93052, rend_intergenic: 64827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96511, rend_intergenic: 93450 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97079, rend_intergenic: 96627 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100514, rend_intergenic: 97362 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113455, rend_intergenic: 110572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114468, rend_intergenic: 113894 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 116772, rend_intergenic: 114512 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135683, rend_intergenic: 129177 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149741, rend_intergenic: 135735 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155867, rend_intergenic: 150820 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165074, rend_intergenic: 157290 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198620, rend_intergenic: 165366 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202088, rend_intergenic: 198636 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213374, rend_intergenic: 202187 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 26 predictions persist after filtering for low support