-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_5843067-6143523

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.1198-T1
Couldn't classify 81287, 81348
Sorry, prediction pasa_asmbl_32247.p1 fails validation.
(ACT)	 AG	81287-81348	GT	CAG
(AGT)	 AG	81458-81572	GT	AGG
(GGC)	 AG	81732-81812	GT	CGG
(GGT)	 AG	82000-82095	GT	CTG
(AGC)	 AG	82263-82349	GT	TAG
(GGA)	 AG	82522-82602	TT	GAT
-recovered pasa_asmbl_32247.p1, terminal, 82522, 82602
-recovered pasa_asmbl_32247.p1, internal, 81287, 81348
-recovered pasa_asmbl_32247.p1, internal, 81458, 81572
-recovered pasa_asmbl_32247.p1, internal, 81732, 81812
-recovered pasa_asmbl_32247.p1, internal, 82000, 82095
-recovered pasa_asmbl_32247.p1, internal, 82263, 82349
Valid prediction for snap_scaffold_24-snap.1174-T1
Valid prediction for Augustus_model.g35030.t1
Valid prediction for snap_scaffold_24-snap.1189-T1
Valid prediction for snap_scaffold_24-snap.1164-T1
Valid prediction for snap_scaffold_24-snap.1207-T1
Valid prediction for snap_scaffold_24-snap.1169-T1
Couldn't classify 80076, 80221
Sorry, prediction pasa_asmbl_32246.p1 fails validation.
(ATG)	 GG	76286-76310	GT	CGG
(ATG)	 AG	76851-76927	GT	AGG
(GCC)	 AG	77350-77524	GT	GAG
(TTG)	 AG	78350-78450	GT	CGG
(TGG)	 AG	78974-79071	GT	TCG
(CTT)	 AG	79185-79279	GT	AGG
(GAA)	 AG	80076-80221	AG	AGA
-recovered pasa_asmbl_32246.p1, initial, 76286, 76310
add_exon() Sorry, pasa_asmbl_32246.p1 76851-76927-initial-1 is invalid.
-recovered pasa_asmbl_32246.p1, initial, 76851, 76927
add_exon() Sorry, pasa_asmbl_32246.p1 77350-77524-terminal-3 is invalid.
-recovered pasa_asmbl_32246.p1, terminal, 77350, 77524
-recovered pasa_asmbl_32246.p1, internal, 76851, 76927
-recovered pasa_asmbl_32246.p1, internal, 77350, 77524
-recovered pasa_asmbl_32246.p1, internal, 78350, 78450
-recovered pasa_asmbl_32246.p1, internal, 78974, 79071
-recovered pasa_asmbl_32246.p1, internal, 79185, 79279
Valid prediction for snap_scaffold_24-snap.1183-T1
Valid prediction for HiQ_model.g35023.t1
Valid prediction for snap_scaffold_24-snap.1186-T1
Valid prediction for snap_scaffold_24-snap.1213-T1
Valid prediction for CodingQuarry_transcript_37319-T1
Valid prediction for snap_scaffold_24-snap.1166-T1
Valid prediction for GlimmerHMM_glimmerT_52595-T1
Valid prediction for GlimmerHMM_glimmerT_52580-T1
Valid prediction for pasa_asmbl_32250.p1
Valid prediction for CodingQuarry_transcript_37322-T1
Valid prediction for CodingQuarry_transcript_37321-T1
Valid prediction for pasa_asmbl_32251.p1
Valid prediction for snap_scaffold_24-snap.1182-T1
Valid prediction for HiQ_model.g35024.t1
Valid prediction for snap_scaffold_24-snap.1202-T1
Valid prediction for HiQ_model.g35019.t1
Couldn't classify 48028, 48135
Sorry, prediction pasa_asmbl_32244.p1 fails validation.
(GAG)	 AG	48028-48135	GT	ACG
(GTA)	 AG	48385-48538	GT	TGG
(GTG)	 AG	49133-49200	GC	AGG
(GAG)	 AG	51270-51391	GT	AGG
(AGT)	 AG	51811-51937	GT	AGG
(GTT)	 AG	52371-52475	GT	CAG
(GAG)	 AG	52756-52858	GT	CGG
(AGA)	 AG	53760-53986	GT	AGG
(GTC)	 AG	54119-54292	GT	TGG
(GTG)	 AG	54485-54681	GT	CAG
(GGA)	 AG	55230-55398	AC	GAA
-recovered pasa_asmbl_32244.p1, terminal, 55230, 55398
-recovered pasa_asmbl_32244.p1, internal, 48028, 48135
-recovered pasa_asmbl_32244.p1, internal, 48385, 48538
-recovered pasa_asmbl_32244.p1, internal, 49133, 49200
-recovered pasa_asmbl_32244.p1, internal, 51270, 51391
-recovered pasa_asmbl_32244.p1, internal, 51811, 51937
-recovered pasa_asmbl_32244.p1, internal, 52371, 52475
-recovered pasa_asmbl_32244.p1, internal, 52756, 52858
-recovered pasa_asmbl_32244.p1, internal, 53760, 53986
-recovered pasa_asmbl_32244.p1, internal, 54119, 54292
-recovered pasa_asmbl_32244.p1, internal, 54485, 54681
Valid prediction for snap_scaffold_24-snap.1165-T1
Couldn't classify 21392, 21537
Sorry, prediction pasa_asmbl_32236.p1 fails validation.
(TAC)	 GC	21392-21537	GT	AGG
(GTC)	 AG	21749-21809	GT	GTG
(AGC)	 AG	21913-21985	GT	TGG
(CAT)	 AG	22497-22600	GT	AGG
(TTG)	 AG	22787-22885	GT	AGG
(CAT)	 AG	23084-23155	GT	AGG
(GAT)	 AG	23407-23475	GT	TGG
(AAC)	 AG	23582-23681	GT	AGG
(AGC)	 AG	24013-24093	GT	AGG
(GTT)	 AG	24464-24563	GT	CTG
(GGT)	 AG	25116-25223	GT	GGG
(ATA)	 AG	25483-25498	CC	AAC
-recovered pasa_asmbl_32236.p1, terminal, 25483, 25498
-recovered pasa_asmbl_32236.p1, internal, 21749, 21809
-recovered pasa_asmbl_32236.p1, internal, 21913, 21985
-recovered pasa_asmbl_32236.p1, internal, 22497, 22600
-recovered pasa_asmbl_32236.p1, internal, 22787, 22885
-recovered pasa_asmbl_32236.p1, internal, 23084, 23155
-recovered pasa_asmbl_32236.p1, internal, 23407, 23475
-recovered pasa_asmbl_32236.p1, internal, 23582, 23681
-recovered pasa_asmbl_32236.p1, internal, 24013, 24093
-recovered pasa_asmbl_32236.p1, internal, 24464, 24563
-recovered pasa_asmbl_32236.p1, internal, 25116, 25223
Valid prediction for GlimmerHMM_glimmerT_52584-T1
Valid prediction for snap_scaffold_24-snap.1172-T1
Valid prediction for snap_scaffold_24-snap.1178-T1
Valid prediction for GlimmerHMM_glimmerT_52593-T1
Valid prediction for GlimmerHMM_glimmerT_52587-T1
Valid prediction for HiQ_model.g35017.t1
Valid prediction for snap_scaffold_24-snap.1184-T1
Valid prediction for Augustus_model.g35029.t1
Valid prediction for GlimmerHMM_glimmerT_52600-T1
Valid prediction for GlimmerHMM_glimmerT_52586-T1
Couldn't classify 205803, 205868
Sorry, prediction pasa_asmbl_32278.p1 fails validation.
(ATG)	 AG	200455-200470	GT	CGG
(CTG)	 AG	201188-201231	GT	AGG
(GAA)	 AG	201395-201468	GT	ATG
(CGA)	 AG	201589-201758	GT	TGG
(CCA)	 AG	201916-202124	GT	CGG
(AAT)	 AG	202500-202643	GT	AGG
(TGC)	 AG	202782-203008	GT	GGG
(CGA)	 AG	203326-203386	GT	TGG
(GAT)	 AG	203507-203632	GT	AGG
(GAT)	 AG	203846-203934	GT	AGG
(AGA)	 AG	204041-204119	GT	AGG
(GGT)	 AG	204256-204429	GT	ATG
(ATT)	 AG	204558-204669	GT	AGG
(GTG)	 AG	204828-205024	GT	AGG
(GAC)	 AG	205301-205396	GT	CTG
(GTC)	 AG	205803-205868	TA	GGT
-recovered pasa_asmbl_32278.p1, initial, 200455, 200470
-recovered pasa_asmbl_32278.p1, internal, 200455, 200470
-recovered pasa_asmbl_32278.p1, internal, 201188, 201231
-recovered pasa_asmbl_32278.p1, internal, 201395, 201468
-recovered pasa_asmbl_32278.p1, internal, 201589, 201758
-recovered pasa_asmbl_32278.p1, internal, 201916, 202124
-recovered pasa_asmbl_32278.p1, internal, 202500, 202643
-recovered pasa_asmbl_32278.p1, internal, 202782, 203008
-recovered pasa_asmbl_32278.p1, internal, 203326, 203386
-recovered pasa_asmbl_32278.p1, internal, 203507, 203632
-recovered pasa_asmbl_32278.p1, internal, 203846, 203934
-recovered pasa_asmbl_32278.p1, internal, 204041, 204119
-recovered pasa_asmbl_32278.p1, internal, 204256, 204429
-recovered pasa_asmbl_32278.p1, internal, 204558, 204669
-recovered pasa_asmbl_32278.p1, internal, 204828, 205024
-recovered pasa_asmbl_32278.p1, internal, 205301, 205396
Valid prediction for snap_scaffold_24-snap.1175-T1
Couldn't classify 220951, 221067
Sorry, prediction pasa_asmbl_32279.p1 fails validation.
(AGG)	 CC	220951-221067	GT	AGG
(GAG)	 AG	223949-224065	GT	AGG
(GTG)	 AG	225408-225510	GT	AGG
(GTG)	 AG	227756-227925	GT	AGG
(ATG)	 AG	228780-228872	GT	AGG
(GTG)	 AG	229318-229404	GT	TGG
(GAA)	 AG	231068-231265	GT	CGG
(CTG)	 AG	232236-232382	AC	AAA
-recovered pasa_asmbl_32279.p1, initial, 228780, 228872
-recovered pasa_asmbl_32279.p1, terminal, 232236, 232382
-recovered pasa_asmbl_32279.p1, internal, 223949, 224065
-recovered pasa_asmbl_32279.p1, internal, 225408, 225510
-recovered pasa_asmbl_32279.p1, internal, 227756, 227925
-recovered pasa_asmbl_32279.p1, internal, 228780, 228872
-recovered pasa_asmbl_32279.p1, internal, 229318, 229404
-recovered pasa_asmbl_32279.p1, internal, 231068, 231265
Valid prediction for HiQ_model.g35027.t1
Valid prediction for snap_scaffold_24-snap.1185-T1
Valid prediction for snap_scaffold_24-snap.1201-T1
Valid prediction for GlimmerHMM_glimmerT_52591-T1
Couldn't classify 44445, 44553
Sorry, prediction pasa_asmbl_32237.p1 fails validation.
(ATG)	 AC	42066-42219	GT	AGG
(AAA)	 AG	42358-42493	GT	AGG
(AAC)	 AG	43006-43168	GT	AGG
(ACC)	 AG	43940-44064	GT	AGG
(CCC)	 AG	44445-44553	GT	CGG
-recovered pasa_asmbl_32237.p1, initial, 42066, 42219
-recovered pasa_asmbl_32237.p1, internal, 42358, 42493
-recovered pasa_asmbl_32237.p1, internal, 43006, 43168
-recovered pasa_asmbl_32237.p1, internal, 43940, 44064
-recovered pasa_asmbl_32237.p1, internal, 44445, 44553
Valid prediction for snap_scaffold_24-snap.1214-T1
Valid prediction for snap_scaffold_24-snap.1179-T1
Valid prediction for GlimmerHMM_glimmerT_52610-T1
Valid prediction for HiQ_model.g35013.t1
Valid prediction for snap_scaffold_24-snap.1210-T1
Valid prediction for Augustus_model.g35021.t1
Couldn't classify 55230, 55394
Couldn't classify 56063, 56066
Sorry, prediction CodingQuarry_transcript_37317-T1 fails validation.
(ATG)	 AC	48127-48135	GT	ACG
(GTA)	 AG	48385-48538	GT	TGG
(GTG)	 AG	49133-49200	GC	AGG
(GAG)	 AG	51270-51391	GT	AGG
(AGT)	 AG	51811-51937	GT	AGG
(GTT)	 AG	52371-52475	GT	CAG
(GAG)	 AG	52756-52858	GT	CGG
(AGA)	 AG	53760-53986	GT	AGG
(GTC)	 AG	54119-54292	GT	TGG
(GTG)	 AG	54485-54681	GT	CAG
(GGA)	 AG	55230-55394	CT	ACC
(CTG)	 AC	56063-56066	AC	GAA
-recovered CodingQuarry_transcript_37317-T1, initial, 48127, 48135
-recovered CodingQuarry_transcript_37317-T1, internal, 48385, 48538
-recovered CodingQuarry_transcript_37317-T1, internal, 49133, 49200
-recovered CodingQuarry_transcript_37317-T1, internal, 51270, 51391
-recovered CodingQuarry_transcript_37317-T1, internal, 51811, 51937
-recovered CodingQuarry_transcript_37317-T1, internal, 52371, 52475
-recovered CodingQuarry_transcript_37317-T1, internal, 52756, 52858
-recovered CodingQuarry_transcript_37317-T1, internal, 53760, 53986
-recovered CodingQuarry_transcript_37317-T1, internal, 54119, 54292
-recovered CodingQuarry_transcript_37317-T1, internal, 54485, 54681
Valid prediction for snap_scaffold_24-snap.1195-T1
Valid prediction for CodingQuarry_transcript_37318-T1
Valid prediction for GlimmerHMM_glimmerT_52604-T1
Valid prediction for snap_scaffold_24-snap.1205-T1
Valid prediction for snap_scaffold_24-snap.1200-T1
Valid prediction for HiQ_model.g35034.t1
Valid prediction for snap_scaffold_24-snap.1199-T1
Valid prediction for snap_scaffold_24-snap.1204-T1
Valid prediction for snap_scaffold_24-snap.1176-T1
Valid prediction for GlimmerHMM_glimmerT_52592-T1
Valid prediction for pasa_asmbl_32277.p1
Valid prediction for snap_scaffold_24-snap.1194-T1
Valid prediction for snap_scaffold_24-snap.1171-T1
Valid prediction for GlimmerHMM_glimmerT_52589-T1
Valid prediction for snap_scaffold_24-snap.1181-T1
Valid prediction for GlimmerHMM_glimmerT_52602-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_37315-T1
Couldn't classify 232839, 232982
Sorry, prediction pasa_asmbl_32915.p1 fails validation.
(AGG)	 GC	232839-232982	GT	GGG
(GAT)	 AG	233243-233281	GT	AGG
(ATC)	 AG	233616-233722	GT	AGG
(GTT)	 AG	234916-234979	GT	AGG
(ATG)	 AG	235389-235551	GT	AGG
(GCT)	 AG	236198-236264	GT	TGG
(TGC)	 AG	236407-236608	GT	GCG
(TTC)	 AG	236930-237146	GT	TGG
(GTG)	 AG	237464-237570	CA	AGC
-recovered pasa_asmbl_32915.p1, initial, 235389, 235551
-recovered pasa_asmbl_32915.p1, terminal, 237464, 237570
-recovered pasa_asmbl_32915.p1, internal, 233243, 233281
-recovered pasa_asmbl_32915.p1, internal, 233616, 233722
-recovered pasa_asmbl_32915.p1, internal, 234916, 234979
-recovered pasa_asmbl_32915.p1, internal, 235389, 235551
-recovered pasa_asmbl_32915.p1, internal, 236198, 236264
-recovered pasa_asmbl_32915.p1, internal, 236407, 236608
-recovered pasa_asmbl_32915.p1, internal, 236930, 237146
Valid prediction for GlimmerHMM_glimmerT_52605-T1
Valid prediction for snap_scaffold_24-snap.1209-T1
Valid prediction for snap_scaffold_24-snap.1180-T1
Valid prediction for snap_scaffold_24-snap.1196-T1
Valid prediction for GlimmerHMM_glimmerT_52582-T1
Valid prediction for Augustus_model.g35028.t1
Valid prediction for GlimmerHMM_glimmerT_52583-T1
Valid prediction for GlimmerHMM_glimmerT_52581-T1
Valid prediction for snap_scaffold_24-snap.1160-T1
Valid prediction for pasa_asmbl_32907.p1
Valid prediction for Augustus_model.g35033.t1
Valid prediction for snap_scaffold_24-snap.1206-T1
Valid prediction for snap_scaffold_24-snap.1168-T1
Valid prediction for HiQ_model.g35016.t1
Valid prediction for snap_scaffold_24-snap.1177-T1
Valid prediction for snap_scaffold_24-snap.1211-T1
Valid prediction for Augustus_model.g35025.t1
Valid prediction for GlimmerHMM_glimmerT_52599-T1
Valid prediction for GlimmerHMM_glimmerT_52585-T1
Valid prediction for snap_scaffold_24-snap.1193-T1
Valid prediction for snap_scaffold_24-snap.1161-T1
Valid prediction for snap_scaffold_24-snap.1188-T1
Couldn't classify 182135, 182210
Sorry, prediction pasa_asmbl_32920.p1 fails validation.
(ATG)	 AG	176437-176529	GT	AGG
(GGT)	 AG	177382-177525	GT	AGG
(GCT)	 AG	179152-179222	GT	AGG
(GTG)	 AG	180774-180992	GT	AGG
(CTC)	 AG	182135-182210	CA	TGC
-recovered pasa_asmbl_32920.p1, initial, 176437, 176529
-recovered pasa_asmbl_32920.p1, internal, 176437, 176529
-recovered pasa_asmbl_32920.p1, internal, 177382, 177525
-recovered pasa_asmbl_32920.p1, internal, 179152, 179222
-recovered pasa_asmbl_32920.p1, internal, 180774, 180992
Valid prediction for snap_scaffold_24-snap.1191-T1
Valid prediction for GlimmerHMM_glimmerT_52590-T1
Valid prediction for snap_scaffold_24-snap.1190-T1
Valid prediction for GlimmerHMM_glimmerT_52579-T1
Valid prediction for snap_scaffold_24-snap.1187-T1
Valid prediction for snap_scaffold_24-snap.1192-T1
Valid prediction for snap_scaffold_24-snap.1170-T1
Valid prediction for snap_scaffold_24-snap.1167-T1
Valid prediction for snap_scaffold_24-snap.1197-T1
Valid prediction for Augustus_model.g35031.t1
Valid prediction for GlimmerHMM_glimmerT_52597-T1
Valid prediction for Augustus_model.g35022.t1
Valid prediction for CodingQuarry_transcript_37320-T1
Valid prediction for CodingQuarry_transcript_37316-T1
Valid prediction for Augustus_model.g35012.t1
Valid prediction for pasa_asmbl_33298.p1
Valid prediction for snap_scaffold_24-snap.1162-T1
Valid prediction for GlimmerHMM_glimmerT_52607-T1
Valid prediction for Augustus_model.g35018.t1
Valid prediction for Augustus_model.g35032.t1
Couldn't classify 36194, 36250
Sorry, prediction pasa_asmbl_32929.p1 fails validation.
(GCC)	 GG	36194-36250	GT	AGG
(CTC)	 AG	37496-37615	GT	AGG
(TCC)	 AG	38178-38231	GT	CGG
(ATT)	 AG	39138-39196	GT	GAG
(GGA)	 AG	40346-40529	GT	AGG
(ATC)	 AG	42106-42150	GT	CGG
(ATG)	 AG	42299-42394	GT	AGG
(TTG)	 AG	45375-45449	GT	AGG
(GCT)	 AG	46701-46712	GT	AGG
(GGG)	 AG	48049-48111	GT	CCG
(GAC)	 AG	50310-50422	GT	AGG
(GCG)	 AG	51194-51245	GT	AGG
(GAT)	 AG	51634-51734	GT	AAG
(GAG)	 AG	52057-52162	GT	AGG
(AAA)	 AG	52456-52664	GT	AGG
(GAG)	 AG	52893-52962	GT	AGG
(TTG)	 AG	53168-53262	GT	AGG
(ACA)	 AG	53458-53660	GT	TGG
(TCA)	 AG	54648-54740	GT	AGG
(ACG)	 AG	55078-55313	GT	GGG
(GGC)	 AG	55436-55545	GT	GGG
(ACA)	 AG	55792-55902	GT	CTG
(GCT)	 AG	56033-56180	GC	AGG
-recovered pasa_asmbl_32929.p1, initial, 42299, 42394
add_exon() Sorry, pasa_asmbl_32929.p1 50310-50422-terminal-2 is invalid.
-recovered pasa_asmbl_32929.p1, terminal, 50310, 50422
-recovered pasa_asmbl_32929.p1, terminal, 56033, 56180
-recovered pasa_asmbl_32929.p1, internal, 37496, 37615
-recovered pasa_asmbl_32929.p1, internal, 38178, 38231
-recovered pasa_asmbl_32929.p1, internal, 39138, 39196
-recovered pasa_asmbl_32929.p1, internal, 40346, 40529
-recovered pasa_asmbl_32929.p1, internal, 42106, 42150
-recovered pasa_asmbl_32929.p1, internal, 42299, 42394
-recovered pasa_asmbl_32929.p1, internal, 45375, 45449
-recovered pasa_asmbl_32929.p1, internal, 46701, 46712
-recovered pasa_asmbl_32929.p1, internal, 48049, 48111
-recovered pasa_asmbl_32929.p1, internal, 50310, 50422
-recovered pasa_asmbl_32929.p1, internal, 51194, 51245
-recovered pasa_asmbl_32929.p1, internal, 51634, 51734
-recovered pasa_asmbl_32929.p1, internal, 52057, 52162
-recovered pasa_asmbl_32929.p1, internal, 52456, 52664
-recovered pasa_asmbl_32929.p1, internal, 52893, 52962
-recovered pasa_asmbl_32929.p1, internal, 53168, 53262
-recovered pasa_asmbl_32929.p1, internal, 53458, 53660
-recovered pasa_asmbl_32929.p1, internal, 54648, 54740
-recovered pasa_asmbl_32929.p1, internal, 55078, 55313
-recovered pasa_asmbl_32929.p1, internal, 55436, 55545
-recovered pasa_asmbl_32929.p1, internal, 55792, 55902
-recovered pasa_asmbl_32929.p1, internal, 56033, 56180
Valid prediction for snap_scaffold_24-snap.1208-T1
Valid prediction for GlimmerHMM_glimmerT_52598-T1
Valid prediction for GlimmerHMM_glimmerT_52601-T1
Valid prediction for snap_scaffold_24-snap.1173-T1
Valid prediction for pasa_asmbl_32909.p1
Valid prediction for GlimmerHMM_glimmerT_52608-T1
Valid prediction for snap_scaffold_24-snap.1163-T1
Valid prediction for Augustus_model.g35026.t1
Valid prediction for GlimmerHMM_glimmerT_52594-T1
Valid prediction for HiQ_model.g35015.t1
Valid prediction for Augustus_model.g35020.t1
Valid prediction for GlimmerHMM_glimmerT_52606-T1
Valid prediction for CodingQuarry_transcript_37314-T1
Valid prediction for snap_scaffold_24-snap.1212-T1
Valid prediction for snap_scaffold_24-snap.1203-T1
Valid prediction for GlimmerHMM_glimmerT_52603-T1
Valid prediction for GlimmerHMM_glimmerT_52596-T1
Valid prediction for Augustus_model.g35014.t1
Valid prediction for GlimmerHMM_glimmerT_52588-T1
Valid prediction for GlimmerHMM_glimmerT_52609-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 31558, rend_intergenic: 31269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54685, rend_intergenic: 50993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68687, rend_intergenic: 64845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118681, rend_intergenic: 115616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228561, rend_intergenic: 228044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256004, rend_intergenic: 244939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 283675, rend_intergenic: 277960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 28244, rend_intergenic: 28241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 300457
-exon list size: 549


building trellis

0.2    
0.4    
0.5    
0.7    
0.9    
1.1    
1.3    
1.5    
1.6    
1.8    
2.0    
2.2    
2.4    
2.5    
2.7    
2.9    
3.1    
3.3    
3.4    
3.6    
3.8    
4.0    
4.2    
4.4    
4.5    
4.7    
4.9    
5.1    
5.3    
5.4    
5.6    
5.8    
6.0    
6.2    
6.4    
6.5    
6.7    
6.9    
7.1    
7.3    
7.4    
7.6    
7.8    
8.0    
8.2    
8.3    
8.5    
8.7    
8.9    
9.1    
9.3    
9.4    
9.6    
9.8    
10.0    
10.2    
10.3    
10.5    
10.7    
10.9    
11.1    
11.3    
11.4    
11.6    
11.8    
12.0    
12.2    
12.3    
12.5    
12.7    
12.9    
13.1    
13.2    
13.4    
13.6    
13.8    
14.0    
14.2    
14.3    
14.5    
14.7    
14.9    
15.1    
15.2    
15.4    
15.6    
15.8    
16.0    
16.2    
16.3    
16.5    
16.7    
16.9    
17.1    
17.2    
17.4    
17.6    
17.8    
18.0    
18.1    
18.3    
18.5    
18.7    
18.9    
19.1    
19.2    
19.4    
19.6    
19.8    
20.0    
20.1    
20.3    
20.5    
20.7    
20.9    
21.1    
21.2    
21.4    
21.6    
21.8    
22.0    
22.1    
22.3    
22.5    
22.7    
22.9    
23.0    
23.2    
23.4    
23.6    
23.8    
24.0    
24.1    
24.3    
24.5    
24.7    
24.9    
25.0    
25.2    
25.4    
25.6    
25.8    
26.0    
26.1    
26.3    
26.5    
26.7    
26.9    
27.0    
27.2    
27.4    
27.6    
27.8    
27.9    
28.1    
28.3    
28.5    
28.7    
28.9    
29.0    
29.2    
29.4    
29.6    
29.8    
29.9    
30.1    
30.3    
30.5    
30.7    
30.9    
31.0    
31.2    
31.4    
31.6    
31.8    
31.9    
32.1    
32.3    
32.5    
32.7    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
33.9    
34.1    
34.3    
34.5    
34.7    
34.8    
35.0    
35.2    
35.4    
35.6    
35.8    
35.9    
36.1    
36.3    
36.5    
36.7    
36.8    
37.0    
37.2    
37.4    
37.6    
37.7    
37.9    
38.1    
38.3    
38.5    
38.7    
38.8    
39.0    
39.2    
39.4    
39.6    
39.7    
39.9    
40.1    
40.3    
40.5    
40.7    
40.8    
41.0    
41.2    
41.4    
41.6    
41.7    
41.9    
42.1    
42.3    
42.5    
42.6    
42.8    
43.0    
43.2    
43.4    
43.6    
43.7    
43.9    
44.1    
44.3    
44.5    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.7    
45.9    
46.1    
46.3    
46.5    
46.6    
46.8    
47.0    
47.2    
47.4    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.6    
48.8    
49.0    
49.2    
49.4    
49.5    
49.7    
49.9    
50.1    
50.3    
50.5    
50.6    
50.8    
51.0    
51.2    
51.4    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.6    
52.8    
53.0    
53.2    
53.4    
53.5    
53.7    
53.9    
54.1    
54.3    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.5    
55.7    
55.9    
56.1    
56.3    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.5    
57.7    
57.9    
58.1    
58.3    
58.4    
58.6    
58.8    
59.0    
59.2    
59.3    
59.5    
59.7    
59.9    
60.1    
60.3    
60.4    
60.6    
60.8    
61.0    
61.2    
61.3    
61.5    
61.7    
61.9    
62.1    
62.3    
62.4    
62.6    
62.8    
63.0    
63.2    
63.3    
63.5    
63.7    
63.9    
64.1    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.3    
65.5    
65.7    
65.9    
66.1    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.3    
67.5    
67.7    
67.9    
68.1    
68.2    
68.4    
68.6    
68.8    
69.0    
69.1    
69.3    
69.5    
69.7    
69.9    
70.1    
70.2    
70.4    
70.6    
70.8    
71.0    
71.1    
71.3    
71.5    
71.7    
71.9    
72.1    
72.2    
72.4    
72.6    
72.8    
73.0    
73.1    
73.3    
73.5    
73.7    
73.9    
74.0    
74.2    
74.4    
74.6    
74.8    
75.0    
75.1    
75.3    
75.5    
75.7    
75.9    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.1    
77.3    
77.5    
77.7    
77.9    
78.0    
78.2    
78.4    
78.6    
78.8    
78.9    
79.1    
79.3    
79.5    
79.7    
79.9    
80.0    
80.2    
80.4    
80.6    
80.8    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.0    
82.2    
82.4    
82.6    
82.8    
82.9    
83.1    
83.3    
83.5    
83.7    
83.8    
84.0    
84.2    
84.4    
84.6    
84.8    
84.9    
85.1    
85.3    
85.5    
85.7    
85.8    
86.0    
86.2    
86.4    
86.6    
86.8    
86.9    
87.1    
87.3    
87.5    
87.7    
87.8    
88.0    
88.2    
88.4    
88.6    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.8    
90.0    
90.2    
90.4    
90.6    
90.7    
90.9    
91.1    
91.3    
91.5    
91.7    
91.8    
92.0    
92.2    
92.4    
92.6    
92.7    
92.9    
93.1    
93.3    
93.5    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.7    
94.9    
95.1    
95.3    
95.5    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.7    
96.9    
97.1    
97.3    
97.5    
97.6    
97.8    
98.0    
98.2    
98.4    
98.5    
98.7    
98.9    
99.1    
99.3    
99.5    
99.6    
99.8    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 31558, rend_intergenic: 31269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54685, rend_intergenic: 50993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68687, rend_intergenic: 64845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118681, rend_intergenic: 115616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228561, rend_intergenic: 228044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256004, rend_intergenic: 244939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 283675, rend_intergenic: 277960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 28244, rend_intergenic: 28241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 30 predictions persist after filtering for low support