-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_5624790-5846087

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.1148-T1
Valid prediction for snap_scaffold_24-snap.1139-T1
Valid prediction for snap_scaffold_24-snap.1132-T1
Couldn't classify 215408, 215638
Couldn't classify 217957, 218163
Sorry, prediction pasa_asmbl_32233.p2 fails validation.
(CTG)	 TC	215408-215638	GT	TGG
(GTG)	 AG	217957-218163	CG	TGC
Valid prediction for snap_scaffold_24-snap.1141-T1
Valid prediction for Augustus_model.g35007.t1
Valid prediction for GlimmerHMM_glimmerT_52565-T1
Couldn't classify 147406, 147676
Couldn't classify 148850, 148993
Sorry, prediction pasa_asmbl_32226.p1 fails validation.
(GTG)	 CA	147406-147676	GT	GTG
(CCC)	 AG	147874-148455	GT	AGG
(TCC)	 AG	148627-148763	GT	AGG
(ATT)	 AG	148850-148993	AG	CCA
-recovered pasa_asmbl_32226.p1, internal, 147874, 148455
-recovered pasa_asmbl_32226.p1, internal, 148627, 148763
Valid prediction for GlimmerHMM_glimmerT_52552-T1
Valid prediction for Augustus_model.g35006.t1
Valid prediction for snap_scaffold_24-snap.1133-T1
Valid prediction for Augustus_model.g35002.t1
Valid prediction for snap_scaffold_24-snap.1145-T1
Valid prediction for GlimmerHMM_glimmerT_52573-T1
Valid prediction for snap_scaffold_24-snap.1140-T1
Couldn't classify 168036, 168167
Sorry, prediction pasa_asmbl_32229.p1 fails validation.
(ATG)	 AG	166765-166994	GT	AAG
(GAG)	 AG	167184-167271	GT	AGG
(CTG)	 AG	168036-168167	AG	ACA
-recovered pasa_asmbl_32229.p1, initial, 166765, 166994
-recovered pasa_asmbl_32229.p1, internal, 166765, 166994
-recovered pasa_asmbl_32229.p1, internal, 167184, 167271
Valid prediction for Augustus_model.g35005.t1
Valid prediction for snap_scaffold_24-snap.1153-T1
Valid prediction for GlimmerHMM_glimmerT_52547-T1
Valid prediction for snap_scaffold_24-snap.1151-T1
Valid prediction for snap_scaffold_24-snap.1125-T1
Valid prediction for Augustus_model.g34996.t1
Valid prediction for Augustus_model.g35010.t1
Valid prediction for GlimmerHMM_glimmerT_52578-T1
Valid prediction for pasa_asmbl_32228.p1
Valid prediction for GlimmerHMM_glimmerT_52550-T1
Valid prediction for snap_scaffold_24-snap.1135-T1
Valid prediction for snap_scaffold_24-snap.1150-T1
Valid prediction for snap_scaffold_24-snap.1146-T1
Valid prediction for snap_scaffold_24-snap.1137-T1
Valid prediction for snap_scaffold_24-snap.1122-T1
Valid prediction for Augustus_model.g34993.t1
Valid prediction for snap_scaffold_24-snap.1157-T1
Couldn't classify 189450, 189735
Sorry, prediction pasa_asmbl_32231.p1 fails validation.
(ATG)	 GC	179618-179713	GT	AGG
(TCT)	 AG	182675-182798	GT	AGG
(GAA)	 AG	184513-184688	GT	GAG
(ATT)	 AG	185606-185725	GT	AGG
(AAC)	 AG	187936-188090	GT	AGG
(CGC)	 AG	189450-189735	GT	AGG
-recovered pasa_asmbl_32231.p1, initial, 179618, 179713
-recovered pasa_asmbl_32231.p1, internal, 182675, 182798
-recovered pasa_asmbl_32231.p1, internal, 184513, 184688
-recovered pasa_asmbl_32231.p1, internal, 185606, 185725
-recovered pasa_asmbl_32231.p1, internal, 187936, 188090
-recovered pasa_asmbl_32231.p1, internal, 189450, 189735
Valid prediction for snap_scaffold_24-snap.1158-T1
Valid prediction for GlimmerHMM_glimmerT_52574-T1
Valid prediction for GlimmerHMM_glimmerT_52570-T1
Valid prediction for snap_scaffold_24-snap.1155-T1
Valid prediction for Augustus_model.g34998.t1
Valid prediction for snap_scaffold_24-snap.1123-T1
Valid prediction for Augustus_model.g35008.t1
Valid prediction for snap_scaffold_24-snap.1159-T1
Valid prediction for snap_scaffold_24-snap.1147-T1
Valid prediction for snap_scaffold_24-snap.1144-T1
Valid prediction for GlimmerHMM_glimmerT_52564-T1
Valid prediction for Augustus_model.g34999.t1
Valid prediction for GlimmerHMM_glimmerT_52577-T1
Valid prediction for GlimmerHMM_glimmerT_52572-T1
Valid prediction for Augustus_model.g35009.t1
Valid prediction for GlimmerHMM_glimmerT_52567-T1
Valid prediction for GlimmerHMM_glimmerT_52558-T1
Valid prediction for snap_scaffold_24-snap.1156-T1
Valid prediction for GlimmerHMM_glimmerT_52559-T1
Valid prediction for snap_scaffold_24-snap.1138-T1
Valid prediction for GlimmerHMM_glimmerT_52557-T1
Valid prediction for GlimmerHMM_glimmerT_52562-T1
Valid prediction for snap_scaffold_24-snap.1130-T1
Valid prediction for Augustus_model.g35004.t1
Valid prediction for snap_scaffold_24-snap.1120-T1
Valid prediction for snap_scaffold_24-snap.1143-T1
Valid prediction for snap_scaffold_24-snap.1121-T1
Valid prediction for GlimmerHMM_glimmerT_52576-T1
Valid prediction for GlimmerHMM_glimmerT_52553-T1
Valid prediction for HiQ_model.g35011.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.1127-T1
Valid prediction for GlimmerHMM_glimmerT_52561-T1
Valid prediction for snap_scaffold_24-snap.1136-T1
Valid prediction for GlimmerHMM_glimmerT_52569-T1
Valid prediction for snap_scaffold_24-snap.1149-T1
Valid prediction for snap_scaffold_24-snap.1142-T1
Valid prediction for snap_scaffold_24-snap.1154-T1
Valid prediction for Augustus_model.g34994.t1
Valid prediction for snap_scaffold_24-snap.1128-T1
Valid prediction for GlimmerHMM_glimmerT_52560-T1
Valid prediction for snap_scaffold_24-snap.1117-T1
Valid prediction for Augustus_model.g34995.t1
Valid prediction for snap_scaffold_24-snap.1116-T1
Valid prediction for GlimmerHMM_glimmerT_52548-T1
Valid prediction for Augustus_model.g34997.t1
Valid prediction for snap_scaffold_24-snap.1152-T1
Valid prediction for snap_scaffold_24-snap.1126-T1
Valid prediction for GlimmerHMM_glimmerT_52549-T1
Valid prediction for snap_scaffold_24-snap.1119-T1
Valid prediction for snap_scaffold_24-snap.1129-T1
Valid prediction for GlimmerHMM_glimmerT_52554-T1
Valid prediction for GlimmerHMM_glimmerT_52563-T1
Valid prediction for Augustus_model.g35001.t1
Valid prediction for snap_scaffold_24-snap.1118-T1
Valid prediction for GlimmerHMM_glimmerT_52566-T1
Valid prediction for snap_scaffold_24-snap.1134-T1
Valid prediction for GlimmerHMM_glimmerT_52571-T1
Valid prediction for GlimmerHMM_glimmerT_52575-T1
Valid prediction for GlimmerHMM_glimmerT_52556-T1
Valid prediction for Augustus_model.g35003.t1
Valid prediction for snap_scaffold_24-snap.1124-T1
Valid prediction for GlimmerHMM_glimmerT_52551-T1
Valid prediction for GlimmerHMM_glimmerT_52568-T1
Valid prediction for Augustus_model.g35000.t1
Valid prediction for GlimmerHMM_glimmerT_52555-T1
Valid prediction for snap_scaffold_24-snap.1131-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25625, rend_intergenic: 24424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84210, rend_intergenic: 76368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86605, rend_intergenic: 84700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113919, rend_intergenic: 109142  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164188, rend_intergenic: 160526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189947, rend_intergenic: 189289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195611, rend_intergenic: 191025  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 221298
-exon list size: 331


building trellis

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97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 25625, rend_intergenic: 24424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84210, rend_intergenic: 76368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86605, rend_intergenic: 84700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113919, rend_intergenic: 109142  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164188, rend_intergenic: 160526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189947, rend_intergenic: 189289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195611, rend_intergenic: 191025  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support