-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_5447078-5629293

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g34984.t1
Valid prediction for Augustus_model.g34981.t1
Valid prediction for snap_scaffold_24-snap.1098-T1
Valid prediction for CodingQuarry_transcript_37312-T1
Valid prediction for snap_scaffold_24-snap.1099-T1
Valid prediction for snap_scaffold_24-snap.1083-T1
Valid prediction for GlimmerHMM_glimmerT_52535-T1
Valid prediction for GlimmerHMM_glimmerT_52539-T1
Valid prediction for snap_scaffold_24-snap.1089-T1
Valid prediction for GlimmerHMM_glimmerT_52543-T1
Couldn't classify 7985, 8146
Sorry, prediction pasa_asmbl_32221.p1 fails validation.
(GAG)	 CA	7985-8146	GT	AGG
(TTC)	 AG	8411-8609	GT	CAG
(GCT)	 AG	11090-11166	GT	CGG
(GAA)	 AG	11260-11315	GT	AGG
(GTG)	 AG	11642-11750	GT	TGG
(TAT)	 AG	12728-12796	AC	AGA
-recovered pasa_asmbl_32221.p1, terminal, 12728, 12796
-recovered pasa_asmbl_32221.p1, internal, 8411, 8609
-recovered pasa_asmbl_32221.p1, internal, 11090, 11166
-recovered pasa_asmbl_32221.p1, internal, 11260, 11315
-recovered pasa_asmbl_32221.p1, internal, 11642, 11750
Valid prediction for snap_scaffold_24-snap.1095-T1
Valid prediction for GlimmerHMM_glimmerT_52542-T1
Valid prediction for snap_scaffold_24-snap.1097-T1
Valid prediction for snap_scaffold_24-snap.1109-T1
Valid prediction for snap_scaffold_24-snap.1112-T1
Valid prediction for GlimmerHMM_glimmerT_52544-T1
Valid prediction for snap_scaffold_24-snap.1085-T1
Couldn't classify 18097, 18183
Sorry, prediction pasa_asmbl_32223.p1 fails validation.
(TTC)	 AG	18097-18183	GT	TGG
(GCT)	 AG	18483-18998	AG	AAA
-recovered pasa_asmbl_32223.p1, terminal, 18483, 18998
-recovered pasa_asmbl_32223.p1, internal, 18097, 18183
Valid prediction for GlimmerHMM_glimmerT_52525-T1
Valid prediction for snap_scaffold_24-snap.1091-T1
Valid prediction for GlimmerHMM_glimmerT_52530-T1
Couldn't classify 15756, 15836
Couldn't classify 16411, 16467
Sorry, prediction pasa_asmbl_32222.p1 fails validation.
(GCC)	 TC	15756-15836	GT	GGG
(ATG)	 AG	16122-16283	GT	TGG
(AGT)	 AG	16411-16467	AC	ACA
-recovered pasa_asmbl_32222.p1, initial, 16122, 16283
-recovered pasa_asmbl_32222.p1, internal, 16122, 16283
Valid prediction for snap_scaffold_24-snap.1090-T1
Valid prediction for GlimmerHMM_glimmerT_52526-T1
Valid prediction for snap_scaffold_24-snap.1088-T1
Valid prediction for snap_scaffold_24-snap.1082-T1
Valid prediction for GlimmerHMM_glimmerT_52545-T1
Valid prediction for snap_scaffold_24-snap.1104-T1
Valid prediction for Augustus_model.g34982.t1
Valid prediction for GlimmerHMM_glimmerT_52536-T1
Valid prediction for snap_scaffold_24-snap.1103-T1
Valid prediction for snap_scaffold_24-snap.1092-T1
Valid prediction for Augustus_model.g34991.t1
Valid prediction for Augustus_model.g34989.t1
Valid prediction for GlimmerHMM_glimmerT_52529-T1
Valid prediction for snap_scaffold_24-snap.1096-T1
Valid prediction for GlimmerHMM_glimmerT_52537-T1
Valid prediction for GlimmerHMM_glimmerT_52533-T1
Valid prediction for snap_scaffold_24-snap.1114-T1
Valid prediction for snap_scaffold_24-snap.1102-T1
Valid prediction for Augustus_model.g34983.t1
Valid prediction for snap_scaffold_24-snap.1107-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.1087-T1
Valid prediction for snap_scaffold_24-snap.1101-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_52541-T1
Valid prediction for snap_scaffold_24-snap.1106-T1
Valid prediction for snap_scaffold_24-snap.1110-T1
Valid prediction for Augustus_model.g34990.t1
Valid prediction for snap_scaffold_24-snap.1086-T1
Valid prediction for GlimmerHMM_glimmerT_52532-T1
Valid prediction for snap_scaffold_24-snap.1113-T1
Valid prediction for snap_scaffold_24-snap.1111-T1
Valid prediction for Augustus_model.g34987.t1
Valid prediction for GlimmerHMM_glimmerT_52540-T1
Valid prediction for snap_scaffold_24-snap.1093-T1
Valid prediction for snap_scaffold_24-snap.1100-T1
Valid prediction for Augustus_model.g34986.t1
Valid prediction for snap_scaffold_24-snap.1108-T1
Valid prediction for GlimmerHMM_glimmerT_52527-T1
Valid prediction for Augustus_model.g34988.t1
Valid prediction for snap_scaffold_24-snap.1094-T1
Valid prediction for snap_scaffold_24-snap.1084-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_52528-T1
Valid prediction for GlimmerHMM_glimmerT_52546-T1
Valid prediction for snap_scaffold_24-snap.1105-T1
Valid prediction for Augustus_model.g34985.t1
Valid prediction for GlimmerHMM_glimmerT_52531-T1
Valid prediction for Augustus_model.g34992.t1
Valid prediction for GlimmerHMM_glimmerT_52538-T1
Valid prediction for snap_scaffold_24-snap.1115-T1
Valid prediction for GlimmerHMM_glimmerT_52534-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13151, rend_intergenic: 7225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28657, rend_intergenic: 26230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177712, rend_intergenic: 174533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 182216
-exon list size: 206


building trellis

0.5    
1.0    
1.4    
1.9    
2.4    
2.9    
3.4    
3.8    
4.3    
4.8    
5.3    
5.8    
6.2    
6.7    
7.2    
7.7    
8.2    
8.7    
9.1    
9.6    
10.1    
10.6    
11.1    
11.5    
12.0    
12.5    
13.0    
13.5    
13.9    
14.4    
14.9    
15.4    
15.9    
16.3    
16.8    
17.3    
17.8    
18.3    
18.8    
19.2    
19.7    
20.2    
20.7    
21.2    
21.6    
22.1    
22.6    
23.1    
23.6    
24.0    
24.5    
25.0    
25.5    
26.0    
26.4    
26.9    
27.4    
27.9    
28.4    
28.8    
29.3    
29.8    
30.3    
30.8    
31.2    
31.7    
32.2    
32.7    
33.2    
33.7    
34.1    
34.6    
35.1    
35.6    
36.1    
36.5    
37.0    
37.5    
38.0    
38.5    
38.9    
39.4    
39.9    
40.4    
40.9    
41.3    
41.8    
42.3    
42.8    
43.3    
43.8    
44.2    
44.7    
45.2    
45.7    
46.2    
46.6    
47.1    
47.6    
48.1    
48.6    
49.0    
49.5    
50.0    
50.5    
51.0    
51.4    
51.9    
52.4    
52.9    
53.4    
53.8    
54.3    
54.8    
55.3    
55.8    
56.2    
56.7    
57.2    
57.7    
58.2    
58.7    
59.1    
59.6    
60.1    
60.6    
61.1    
61.5    
62.0    
62.5    
63.0    
63.5    
63.9    
64.4    
64.9    
65.4    
65.9    
66.3    
66.8    
67.3    
67.8    
68.3    
68.8    
69.2    
69.7    
70.2    
70.7    
71.2    
71.6    
72.1    
72.6    
73.1    
73.6    
74.0    
74.5    
75.0    
75.5    
76.0    
76.4    
76.9    
77.4    
77.9    
78.4    
78.8    
79.3    
79.8    
80.3    
80.8    
81.2    
81.7    
82.2    
82.7    
83.2    
83.7    
84.1    
84.6    
85.1    
85.6    
86.1    
86.5    
87.0    
87.5    
88.0    
88.5    
88.9    
89.4    
89.9    
90.4    
90.9    
91.3    
91.8    
92.3    
92.8    
93.3    
93.8    
94.2    
94.7    
95.2    
95.7    
96.2    
96.6    
97.1    
97.6    
98.1    
98.6    
99.0    
99.5    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 13151, rend_intergenic: 7225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28657, rend_intergenic: 26230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177712, rend_intergenic: 174533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support