-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_5018639-5257338

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.1036-T1
Valid prediction for GlimmerHMM_glimmerT_52474-T1
Valid prediction for snap_scaffold_24-snap.1034-T1
Valid prediction for GlimmerHMM_glimmerT_52483-T1
Valid prediction for GlimmerHMM_glimmerT_52490-T1
Valid prediction for snap_scaffold_24-snap.1018-T1
Valid prediction for GlimmerHMM_glimmerT_52493-T1
Valid prediction for GlimmerHMM_glimmerT_52484-T1
Valid prediction for snap_scaffold_24-snap.1023-T1
Valid prediction for GlimmerHMM_glimmerT_52495-T1
Valid prediction for GlimmerHMM_glimmerT_52486-T1
Valid prediction for snap_scaffold_24-snap.1022-T1
Valid prediction for Augustus_model.g34955.t1
Valid prediction for snap_scaffold_24-snap.1040-T1
Valid prediction for GlimmerHMM_glimmerT_52477-T1
Valid prediction for GlimmerHMM_glimmerT_52471-T1
Valid prediction for snap_scaffold_24-snap.1030-T1
Valid prediction for snap_scaffold_24-snap.1026-T1
Valid prediction for Augustus_model.g34954.t1
Valid prediction for GlimmerHMM_glimmerT_52489-T1
Valid prediction for snap_scaffold_24-snap.1042-T1
Valid prediction for GlimmerHMM_glimmerT_52475-T1
Valid prediction for snap_scaffold_24-snap.1025-T1
Valid prediction for Augustus_model.g34956.t1
Valid prediction for GlimmerHMM_glimmerT_52476-T1
Valid prediction for GlimmerHMM_glimmerT_52472-T1
Valid prediction for snap_scaffold_24-snap.1024-T1
Valid prediction for snap_scaffold_24-snap.1029-T1
Valid prediction for snap_scaffold_24-snap.1038-T1
Valid prediction for GlimmerHMM_glimmerT_52479-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_52488-T1
Valid prediction for GlimmerHMM_glimmerT_52482-T1
Valid prediction for HiQ_model.g34957.t1
Valid prediction for Augustus_model.g34953.t1
Valid prediction for snap_scaffold_24-snap.1017-T1
Valid prediction for GlimmerHMM_glimmerT_52487-T1
Valid prediction for pasa_asmbl_32883.p1
Valid prediction for snap_scaffold_24-snap.1043-T1
Valid prediction for GlimmerHMM_glimmerT_52469-T1
Valid prediction for snap_scaffold_24-snap.1020-T1
Valid prediction for snap_scaffold_24-snap.1037-T1
Valid prediction for snap_scaffold_24-snap.1041-T1
Valid prediction for snap_scaffold_24-snap.1031-T1
Valid prediction for GlimmerHMM_glimmerT_52478-T1
Valid prediction for GlimmerHMM_glimmerT_52485-T1
Valid prediction for GlimmerHMM_glimmerT_52481-T1
Valid prediction for GlimmerHMM_glimmerT_52494-T1
Valid prediction for snap_scaffold_24-snap.1033-T1
Valid prediction for snap_scaffold_24-snap.1028-T1
Valid prediction for snap_scaffold_24-snap.1035-T1
Valid prediction for GlimmerHMM_glimmerT_52492-T1
Valid prediction for snap_scaffold_24-snap.1019-T1
Valid prediction for snap_scaffold_24-snap.1021-T1
Valid prediction for snap_scaffold_24-snap.1039-T1
Valid prediction for GlimmerHMM_glimmerT_52480-T1
Valid prediction for GlimmerHMM_glimmerT_52491-T1
Valid prediction for GlimmerHMM_glimmerT_52473-T1
Valid prediction for snap_scaffold_24-snap.1032-T1
Valid prediction for snap_scaffold_24-snap.1027-T1
Valid prediction for Augustus_model.g34952.t1
Valid prediction for snap_scaffold_24-snap.1016-T1
Valid prediction for GlimmerHMM_glimmerT_52470-T1
Valid prediction for snap_scaffold_24-snap.1015-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17866, rend_intergenic: 14410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35121, rend_intergenic: 27582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79407, rend_intergenic: 74500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 238700
-exon list size: 187


building trellis

0.5    
1.1    
1.6    
2.1    
2.6    
3.2    
3.7    
4.2    
4.8    
5.3    
5.8    
6.3    
6.9    
7.4    
7.9    
8.5    
9.0    
9.5    
10.1    
10.6    
11.1    
11.6    
12.2    
12.7    
13.2    
13.8    
14.3    
14.8    
15.3    
15.9    
16.4    
16.9    
17.5    
18.0    
18.5    
19.0    
19.6    
20.1    
20.6    
21.2    
21.7    
22.2    
22.8    
23.3    
23.8    
24.3    
24.9    
25.4    
25.9    
26.5    
27.0    
27.5    
28.0    
28.6    
29.1    
29.6    
30.2    
30.7    
31.2    
31.7    
32.3    
32.8    
33.3    
33.9    
34.4    
34.9    
35.4    
36.0    
36.5    
37.0    
37.6    
38.1    
38.6    
39.2    
39.7    
40.2    
40.7    
41.3    
41.8    
42.3    
42.9    
43.4    
43.9    
44.4    
45.0    
45.5    
46.0    
46.6    
47.1    
47.6    
48.1    
48.7    
49.2    
49.7    
50.3    
50.8    
51.3    
51.9    
52.4    
52.9    
53.4    
54.0    
54.5    
55.0    
55.6    
56.1    
56.6    
57.1    
57.7    
58.2    
58.7    
59.3    
59.8    
60.3    
60.8    
61.4    
61.9    
62.4    
63.0    
63.5    
64.0    
64.6    
65.1    
65.6    
66.1    
66.7    
67.2    
67.7    
68.3    
68.8    
69.3    
69.8    
70.4    
70.9    
71.4    
72.0    
72.5    
73.0    
73.5    
74.1    
74.6    
75.1    
75.7    
76.2    
76.7    
77.2    
77.8    
78.3    
78.8    
79.4    
79.9    
80.4    
81.0    
81.5    
82.0    
82.5    
83.1    
83.6    
84.1    
84.7    
85.2    
85.7    
86.2    
86.8    
87.3    
87.8    
88.4    
88.9    
89.4    
89.9    
90.5    
91.0    
91.5    
92.1    
92.6    
93.1    
93.7    
94.2    
94.7    
95.2    
95.8    
96.3    
96.8    
97.4    
97.9    
98.4    
98.9    
99.5    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 17866, rend_intergenic: 14410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35121, rend_intergenic: 27582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79407, rend_intergenic: 74500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 226711 - 238700
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support