-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_4419090-4678766

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g34928.t1
Valid prediction for snap_scaffold_24-snap.970-T1
Valid prediction for HiQ_model.g34925.t1
Valid prediction for snap_scaffold_24-snap.935-T1
Valid prediction for snap_scaffold_24-snap.937-T1
Valid prediction for GlimmerHMM_glimmerT_52415-T1
Valid prediction for snap_scaffold_24-snap.938-T1
Valid prediction for GlimmerHMM_glimmerT_52435-T1
Valid prediction for snap_scaffold_24-snap.955-T1
Valid prediction for snap_scaffold_24-snap.954-T1
Valid prediction for snap_scaffold_24-snap.933-T1
Valid prediction for snap_scaffold_24-snap.957-T1
Valid prediction for GlimmerHMM_glimmerT_52426-T1
Valid prediction for GlimmerHMM_glimmerT_52425-T1
Valid prediction for GlimmerHMM_glimmerT_52430-T1
Valid prediction for GlimmerHMM_glimmerT_52416-T1
Valid prediction for snap_scaffold_24-snap.940-T1
Valid prediction for GlimmerHMM_glimmerT_52422-T1
Valid prediction for snap_scaffold_24-snap.951-T1
Valid prediction for snap_scaffold_24-snap.959-T1
Valid prediction for pasa_asmbl_32200.p1
Valid prediction for snap_scaffold_24-snap.943-T1
Valid prediction for snap_scaffold_24-snap.934-T1
Valid prediction for snap_scaffold_24-snap.942-T1
Valid prediction for snap_scaffold_24-snap.969-T1
Valid prediction for GlimmerHMM_glimmerT_52414-T1
Valid prediction for Augustus_model.g34926.t1
Valid prediction for snap_scaffold_24-snap.936-T1
Valid prediction for snap_scaffold_24-snap.958-T1
Valid prediction for snap_scaffold_24-snap.965-T1
Valid prediction for snap_scaffold_24-snap.950-T1
Valid prediction for snap_scaffold_24-snap.932-T1
Valid prediction for snap_scaffold_24-snap.968-T1
Valid prediction for GlimmerHMM_glimmerT_52417-T1
Valid prediction for snap_scaffold_24-snap.964-T1
Valid prediction for snap_scaffold_24-snap.971-T1
Valid prediction for snap_scaffold_24-snap.939-T1
Valid prediction for Augustus_model.g34927.t1
Valid prediction for GlimmerHMM_glimmerT_52420-T1
Valid prediction for GlimmerHMM_glimmerT_52431-T1
Valid prediction for GlimmerHMM_glimmerT_52432-T1
Valid prediction for snap_scaffold_24-snap.962-T1
Valid prediction for CodingQuarry_transcript_37298-T1
Valid prediction for Augustus_model.g34932.t1
Valid prediction for GlimmerHMM_glimmerT_52429-T1
Valid prediction for snap_scaffold_24-snap.972-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g34930.t1
Valid prediction for GlimmerHMM_glimmerT_52423-T1
Valid prediction for snap_scaffold_24-snap.930-T1
Valid prediction for snap_scaffold_24-snap.949-T1
Valid prediction for snap_scaffold_24-snap.973-T1
Valid prediction for GlimmerHMM_glimmerT_52419-T1
Valid prediction for snap_scaffold_24-snap.946-T1
Valid prediction for Augustus_model.g34923.t1
Valid prediction for GlimmerHMM_glimmerT_52434-T1
Valid prediction for snap_scaffold_24-snap.961-T1
Valid prediction for snap_scaffold_24-snap.945-T1
Valid prediction for snap_scaffold_24-snap.963-T1
Valid prediction for snap_scaffold_24-snap.948-T1
Valid prediction for GlimmerHMM_glimmerT_52418-T1
Valid prediction for snap_scaffold_24-snap.967-T1
Valid prediction for snap_scaffold_24-snap.947-T1
Valid prediction for GlimmerHMM_glimmerT_52413-T1
Valid prediction for snap_scaffold_24-snap.944-T1
Valid prediction for GlimmerHMM_glimmerT_52424-T1
Valid prediction for Augustus_model.g34933.t1
Valid prediction for snap_scaffold_24-snap.928-T1
Valid prediction for snap_scaffold_24-snap.960-T1
Valid prediction for Augustus_model.g34934.t1
Valid prediction for Augustus_model.g34929.t1
Valid prediction for GlimmerHMM_glimmerT_52428-T1
Valid prediction for snap_scaffold_24-snap.966-T1
Valid prediction for snap_scaffold_24-snap.952-T1
Valid prediction for GlimmerHMM_glimmerT_52421-T1
Valid prediction for snap_scaffold_24-snap.941-T1
Valid prediction for Augustus_model.g34924.t1
Valid prediction for Augustus_model.g34922.t1
Valid prediction for snap_scaffold_24-snap.931-T1
Valid prediction for snap_scaffold_24-snap.956-T1
Valid prediction for Augustus_model.g34935.t1
Valid prediction for snap_scaffold_24-snap.953-T1
Valid prediction for snap_scaffold_24-snap.974-T1
Valid prediction for GlimmerHMM_glimmerT_52433-T1
Valid prediction for Augustus_model.g34931.t1
Valid prediction for GlimmerHMM_glimmerT_52427-T1
Valid prediction for snap_scaffold_24-snap.929-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 137624, rend_intergenic: 134702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142212, rend_intergenic: 139210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156476, rend_intergenic: 149334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178264, rend_intergenic: 175193  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 259677
-exon list size: 314


building trellis

0.3    
0.6    
0.9    
1.3    
1.6    
1.9    
2.2    
2.5    
2.8    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
5.1    
5.4    
5.7    
6.0    
6.3    
6.6    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.9    
9.2    
9.5    
9.8    
10.1    
10.4    
10.8    
11.1    
11.4    
11.7    
12.0    
12.3    
12.7    
13.0    
13.3    
13.6    
13.9    
14.2    
14.6    
14.9    
15.2    
15.5    
15.8    
16.1    
16.5    
16.8    
17.1    
17.4    
17.7    
18.0    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.2    
22.5    
22.8    
23.1    
23.4    
23.7    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.3    
26.6    
26.9    
27.2    
27.5    
27.8    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.9    
34.2    
34.5    
34.8    
35.1    
35.4    
35.8    
36.1    
36.4    
36.7    
37.0    
37.3    
37.7    
38.0    
38.3    
38.6    
38.9    
39.2    
39.6    
39.9    
40.2    
40.5    
40.8    
41.1    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.4    
43.7    
44.0    
44.3    
44.6    
44.9    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
55.1    
55.4    
55.7    
56.0    
56.3    
56.6    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.9    
59.2    
59.5    
59.8    
60.1    
60.4    
60.8    
61.1    
61.4    
61.7    
62.0    
62.3    
62.7    
63.0    
63.3    
63.6    
63.9    
64.2    
64.6    
64.9    
65.2    
65.5    
65.8    
66.1    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.2    
72.5    
72.8    
73.1    
73.4    
73.7    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.3    
76.6    
76.9    
77.2    
77.5    
77.8    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
82.0    
82.3    
82.6    
82.9    
83.2    
83.5    
83.9    
84.2    
84.5    
84.8    
85.1    
85.4    
85.8    
86.1    
86.4    
86.7    
87.0    
87.3    
87.7    
88.0    
88.3    
88.6    
88.9    
89.2    
89.6    
89.9    
90.2    
90.5    
90.8    
91.1    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.4    
93.7    
94.0    
94.3    
94.6    
94.9    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.2    
97.5    
97.8    
98.1    
98.4    
98.7    
99.1    
99.4    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 137624, rend_intergenic: 134702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142212, rend_intergenic: 139210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156476, rend_intergenic: 149334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178264, rend_intergenic: 175193  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 247556 - 259677
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support