-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_3711370-4088909

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.816-T1
Valid prediction for Augustus_model.g34890.t1
Valid prediction for CodingQuarry_transcript_37281-T1
Valid prediction for snap_scaffold_24-snap.831-T1
Valid prediction for snap_scaffold_24-snap.817-T1
Valid prediction for snap_scaffold_24-snap.874-T1
Valid prediction for snap_scaffold_24-snap.841-T1
Valid prediction for snap_scaffold_24-snap.844-T1
Valid prediction for snap_scaffold_24-snap.820-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_24-snap.813-T1
Valid prediction for snap_scaffold_24-snap.864-T1
Valid prediction for snap_scaffold_24-snap.858-T1
Valid prediction for CodingQuarry_transcript_37283-T1
Valid prediction for GlimmerHMM_glimmerT_52329-T1
Valid prediction for pasa_asmbl_32160.p1
Valid prediction for snap_scaffold_24-snap.840-T1
Valid prediction for Augustus_model.g34876.t1
Valid prediction for snap_scaffold_24-snap.848-T1
Valid prediction for HiQ_model.g34873.t1
Couldn't classify 204850, 204981
Couldn't classify 206258, 206382
Sorry, prediction pasa_asmbl_32167.p1 fails validation.
(GGG)	 CA	204850-204981	GT	AGG
(GAC)	 AG	205351-205689	GT	AGG
(GTA)	 AG	205865-205991	GT	CGG
(ATG)	 AG	206258-206382	CA	CCC
-recovered pasa_asmbl_32167.p1, internal, 205351, 205689
-recovered pasa_asmbl_32167.p1, internal, 205865, 205991
Valid prediction for GlimmerHMM_glimmerT_52363-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g34853.t1
Valid prediction for snap_scaffold_24-snap.870-T1
Valid prediction for Augustus_model.g34860.t1
Valid prediction for GlimmerHMM_glimmerT_52374-T1
Valid prediction for HiQ_model.g34857.t1
Valid prediction for snap_scaffold_24-snap.818-T1
Valid prediction for snap_scaffold_24-snap.867-T1
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 80810, 80811
Sorry, prediction CodingQuarry_transcript_37284-T1 fails validation.
(ATG)	 AA	78146-78320	GT	CAG
(GTG)	 AG	78607-78723	GT	AGG
(CCA)	 AG	79619-79738	GT	GTG
(AGG)	 AG	80810-80811	GC	AGG
-recovered CodingQuarry_transcript_37284-T1, initial, 78146, 78320
-recovered CodingQuarry_transcript_37284-T1, internal, 78607, 78723
-recovered CodingQuarry_transcript_37284-T1, internal, 79619, 79738
-recovered CodingQuarry_transcript_37284-T1, internal, 80810, 80811
Valid prediction for Augustus_model.g34854.t1
Valid prediction for GlimmerHMM_glimmerT_52328-T1
Valid prediction for GlimmerHMM_glimmerT_52327-T1
Valid prediction for snap_scaffold_24-snap.872-T1
Valid prediction for snap_scaffold_24-snap.832-T1
Valid prediction for Augustus_model.g34851.t1
Valid prediction for GlimmerHMM_glimmerT_52362-T1
Valid prediction for snap_scaffold_24-snap.822-T1
Valid prediction for snap_scaffold_24-snap.855-T1
Valid prediction for Augustus_model.g34888.t1
Valid prediction for GlimmerHMM_glimmerT_52325-T1
Valid prediction for GlimmerHMM_glimmerT_52335-T1
Valid prediction for Augustus_model.g34883.t1
Valid prediction for snap_scaffold_24-snap.857-T1
Valid prediction for snap_scaffold_24-snap.829-T1
Valid prediction for snap_scaffold_24-snap.851-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_52375-T1
Valid prediction for snap_scaffold_24-snap.826-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_52352-T1
Valid prediction for snap_scaffold_24-snap.860-T1
Couldn't classify 369141, 369857
Sorry, prediction pasa_asmbl_32172.p1 fails validation.
(TTT)	 AC	369141-369857	GA	AAG
Valid prediction for GlimmerHMM_glimmerT_52358-T1
Valid prediction for snap_scaffold_24-snap.842-T1
Valid prediction for snap_scaffold_24-snap.815-T1
Valid prediction for snap_scaffold_24-snap.856-T1
Valid prediction for GlimmerHMM_glimmerT_52353-T1
Valid prediction for snap_scaffold_24-snap.846-T1
Valid prediction for Augustus_model.g34878.t1
Valid prediction for snap_scaffold_24-snap.863-T1
Valid prediction for Augustus_model.g34849.t1
Valid prediction for GlimmerHMM_glimmerT_52340-T1
Valid prediction for snap_scaffold_24-snap.871-T1
Valid prediction for snap_scaffold_24-snap.868-T1
Valid prediction for snap_scaffold_24-snap.825-T1
Valid prediction for snap_scaffold_24-snap.853-T1
Valid prediction for Augustus_model.g34869.t1
Valid prediction for Augustus_model.g34874.t1
Valid prediction for Augustus_model.g34891.t1
Valid prediction for HiQ_model.g34852.t1
Valid prediction for Augustus_model.g34872.t1
Valid prediction for snap_scaffold_24-snap.819-T1
Valid prediction for GlimmerHMM_glimmerT_52338-T1
Valid prediction for Augustus_model.g34864.t1
Valid prediction for GlimmerHMM_glimmerT_52323-T1
Valid prediction for snap_scaffold_24-snap.873-T1
Valid prediction for GlimmerHMM_glimmerT_52331-T1
Couldn't classify 360597, 360622
Couldn't classify 364434, 364529
Sorry, prediction pasa_asmbl_32171.p1 fails validation.
(GAC)	 CA	360597-360622	GT	AAG
(GTC)	 AG	362991-363159	GT	AAG
(GTT)	 AG	363348-363476	GT	AGG
(AGC)	 AG	364434-364529	GG	AAG
-recovered pasa_asmbl_32171.p1, internal, 362991, 363159
-recovered pasa_asmbl_32171.p1, internal, 363348, 363476
Valid prediction for Augustus_model.g34889.t1
Valid prediction for Augustus_model.g34867.t1
Valid prediction for GlimmerHMM_glimmerT_52359-T1
Valid prediction for Augustus_model.g34877.t1
Couldn't classify 202287, 202379
Couldn't classify 204275, 204341
Sorry, prediction pasa_asmbl_32166.p1 fails validation.
(TAC)	 GG	202287-202379	GT	GAG
(GTG)	 AG	203344-203488	GT	TGG
(GGC)	 AG	203948-204035	GT	AGG
(GCT)	 AG	204275-204341	AC	GCA
-recovered pasa_asmbl_32166.p1, internal, 203344, 203488
-recovered pasa_asmbl_32166.p1, internal, 203948, 204035
Valid prediction for snap_scaffold_24-snap.834-T1
Valid prediction for GlimmerHMM_glimmerT_52349-T1
Valid prediction for GlimmerHMM_glimmerT_52356-T1
Valid prediction for Augustus_model.g34885.t1
Valid prediction for pasa_asmbl_32162.p1
Valid prediction for GlimmerHMM_glimmerT_52345-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g34858.t1
Valid prediction for Augustus_model.g34850.t1
Valid prediction for snap_scaffold_24-snap.843-T1
Valid prediction for Augustus_model.g34861.t1
Valid prediction for GlimmerHMM_glimmerT_52337-T1
Valid prediction for snap_scaffold_24-snap.839-T1
Couldn't classify 363325, 363381
Couldn't classify 364514, 364618
Sorry, prediction pasa_asmbl_33237.p1 fails validation.
(AAG)	 TT	363325-363381	GT	AGG
(GTG)	 AG	364222-364377	GT	AGG
(GTG)	 AG	364514-364618	GG	TGG
-recovered pasa_asmbl_33237.p1, internal, 364222, 364377
Valid prediction for snap_scaffold_24-snap.849-T1
Valid prediction for Augustus_model.g34875.t1
Valid prediction for GlimmerHMM_glimmerT_52361-T1
Valid prediction for snap_scaffold_24-snap.866-T1
Valid prediction for snap_scaffold_24-snap.836-T1
Valid prediction for GlimmerHMM_glimmerT_52350-T1
Valid prediction for snap_scaffold_24-snap.861-T1
Sorry, intron length (8) is less than minimum required (10)
Couldn't classify 310316, 310456
Sorry, prediction pasa_asmbl_32855.p1 fails validation.
(ATG)	 AC	306264-306299	GT	AGG
(GAA)	 AG	307331-307366	GT	GGG
(TTT)	 AG	307663-307728	GT	GGG
(TGT)	 AG	309516-309581	GT	AGG
(CCC)	 AG	309923-309997	GT	AGG
(CGT)	 AG	310316-310456	AT	AGA
-recovered pasa_asmbl_32855.p1, initial, 306264, 306299
-recovered pasa_asmbl_32855.p1, internal, 307331, 307366
-recovered pasa_asmbl_32855.p1, internal, 307663, 307728
-recovered pasa_asmbl_32855.p1, internal, 309516, 309581
-recovered pasa_asmbl_32855.p1, internal, 309923, 309997
Valid prediction for Augustus_model.g34887.t1
Valid prediction for Augustus_model.g34882.t1
Valid prediction for snap_scaffold_24-snap.835-T1
Valid prediction for snap_scaffold_24-snap.852-T1
Valid prediction for snap_scaffold_24-snap.869-T1
Valid prediction for snap_scaffold_24-snap.812-T1
Valid prediction for GlimmerHMM_glimmerT_52342-T1
Valid prediction for GlimmerHMM_glimmerT_52354-T1
Valid prediction for CodingQuarry_transcript_37285-T1
Valid prediction for GlimmerHMM_glimmerT_52369-T1
Valid prediction for snap_scaffold_24-snap.865-T1
Valid prediction for snap_scaffold_24-snap.845-T1
Couldn't classify 160853, 161761
Sorry, prediction pasa_asmbl_32169.p1 fails validation.
(TCT)	 TC	160853-161761	GT	CAG
Valid prediction for snap_scaffold_24-snap.830-T1
Valid prediction for GlimmerHMM_glimmerT_52341-T1
Valid prediction for GlimmerHMM_glimmerT_52370-T1
Valid prediction for GlimmerHMM_glimmerT_52343-T1
Valid prediction for GlimmerHMM_glimmerT_52365-T1
Valid prediction for Augustus_model.g34859.t1
Valid prediction for snap_scaffold_24-snap.821-T1
Valid prediction for snap_scaffold_24-snap.814-T1
Couldn't classify 323161, 323337
Sorry, prediction pasa_asmbl_32851.p1 fails validation.
(ATG)	 AG	318892-318947	GT	AGG
(GTC)	 AG	319650-319716	GT	AGG
(GAC)	 AG	319979-320089	GT	AGG
(GCC)	 AG	320194-320292	GT	TGG
(CTG)	 AG	320607-320780	GT	AGG
(GAG)	 AG	322406-322491	GT	AGG
(GAT)	 AG	322871-322979	GT	AGG
(AAG)	 AG	323161-323337	TC	GCT
-recovered pasa_asmbl_32851.p1, initial, 318892, 318947
-recovered pasa_asmbl_32851.p1, internal, 318892, 318947
-recovered pasa_asmbl_32851.p1, internal, 319650, 319716
-recovered pasa_asmbl_32851.p1, internal, 319979, 320089
-recovered pasa_asmbl_32851.p1, internal, 320194, 320292
-recovered pasa_asmbl_32851.p1, internal, 320607, 320780
-recovered pasa_asmbl_32851.p1, internal, 322406, 322491
-recovered pasa_asmbl_32851.p1, internal, 322871, 322979
Valid prediction for snap_scaffold_24-snap.862-T1
Valid prediction for GlimmerHMM_glimmerT_52360-T1
Valid prediction for GlimmerHMM_glimmerT_52333-T1
Valid prediction for GlimmerHMM_glimmerT_52364-T1
Valid prediction for GlimmerHMM_glimmerT_52348-T1
Valid prediction for Augustus_model.g34855.t1
Valid prediction for Augustus_model.g34868.t1
Valid prediction for Augustus_model.g34886.t1
Valid prediction for GlimmerHMM_glimmerT_52336-T1
Valid prediction for GlimmerHMM_glimmerT_52339-T1
Valid prediction for GlimmerHMM_glimmerT_52324-T1
Valid prediction for Augustus_model.g34866.t1
Couldn't classify 347308, 347643
Sorry, prediction pasa_asmbl_32841.p1 fails validation.
(CTC)	 CT	347308-347643	GG	GGG
Valid prediction for snap_scaffold_24-snap.823-T1
Valid prediction for GlimmerHMM_glimmerT_52351-T1
Valid prediction for snap_scaffold_24-snap.850-T1
Valid prediction for snap_scaffold_24-snap.824-T1
Valid prediction for Augustus_model.g34879.t1
Valid prediction for Augustus_model.g34862.t1
Valid prediction for GlimmerHMM_glimmerT_52366-T1
Valid prediction for snap_scaffold_24-snap.847-T1
Valid prediction for GlimmerHMM_glimmerT_52372-T1
Couldn't classify 365669, 365767
Couldn't classify 367640, 367724
Sorry, prediction pasa_asmbl_32839.p1 fails validation.
(GGC)	 CT	365669-365767	GT	AGG
(GAG)	 AG	366045-366308	GT	AGG
(ATA)	 AG	366397-366540	GT	AGG
(GAT)	 AG	367039-367236	GT	ACG
(GTG)	 AG	367320-367498	GT	GGG
(TTT)	 AG	367640-367724	GA	GAG
-recovered pasa_asmbl_32839.p1, internal, 366045, 366308
-recovered pasa_asmbl_32839.p1, internal, 366397, 366540
-recovered pasa_asmbl_32839.p1, internal, 367039, 367236
-recovered pasa_asmbl_32839.p1, internal, 367320, 367498
Couldn't classify 327197, 327224
Sorry, prediction pasa_asmbl_32843.p1 fails validation.
(GGG)	 TA	327197-327224	GT	TGG
(GCA)	 AG	327309-327470	GT	CTG
(CCT)	 AG	327593-327663	GT	AGG
(ATC)	 AG	327856-328016	GT	AGG
(GCT)	 AG	328106-328167	GT	CAG
(GTT)	 AG	328667-328858	GT	AGG
(GTG)	 AG	329137-329251	GT	AAG
(ATG)	 AG	329431-329575	GT	ATG
(TAC)	 AG	329884-330003	GT	AGG
(GCG)	 AG	330372-330497	GT	AGG
(ATC)	 AG	330828-330926	GT	AGG
(AAA)	 AG	331208-331290	GT	AGG
(GTA)	 AG	331369-331510	GT	AGG
(AGG)	 AG	332681-332800	GT	GGG
(TTC)	 AG	333404-333618	GT	CGG
(TGG)	 AG	334406-334530	GT	GTG
(CCA)	 AG	334682-334823	GT	CTG
(GTC)	 AG	335254-335404	GT	AGG
(ATG)	 AG	335553-335648	GT	CAG
(ACC)	 AG	335840-335943	GT	CGG
(GGT)	 AG	336732-336845	GT	AAG
(GGT)	 AG	339021-339228	GT	GGG
(GGA)	 AG	340022-340111	GT	AGG
(AAC)	 AG	340477-340579	GT	GCG
(CTC)	 AG	340807-340925	GT	AGG
(GTG)	 AG	341087-341200	GT	AGG
(ACC)	 AG	341403-341468	GT	TGG
(GTG)	 AG	341943-342009	GT	GGG
(CTC)	 AG	342816-342894	GT	AAG
(GTG)	 AG	343097-343172	GC	AGG
(ATG)	 AG	343626-343712	GT	AGG
(GAC)	 AG	344071-344181	GT	AGG
(GGT)	 AG	344459-344521	CA	AGC
add_exon() Sorry, pasa_asmbl_32843.p1 329431-329575-initial-1 is invalid.
-recovered pasa_asmbl_32843.p1, initial, 329431, 329575
-recovered pasa_asmbl_32843.p1, initial, 335553, 335648
-recovered pasa_asmbl_32843.p1, initial, 343626, 343712
add_exon() Sorry, pasa_asmbl_32843.p1 328667-328858-terminal-1 is invalid.
-recovered pasa_asmbl_32843.p1, terminal, 328667, 328858
-recovered pasa_asmbl_32843.p1, terminal, 344459, 344521
-recovered pasa_asmbl_32843.p1, internal, 327309, 327470
-recovered pasa_asmbl_32843.p1, internal, 327593, 327663
-recovered pasa_asmbl_32843.p1, internal, 327856, 328016
-recovered pasa_asmbl_32843.p1, internal, 328106, 328167
-recovered pasa_asmbl_32843.p1, internal, 328667, 328858
-recovered pasa_asmbl_32843.p1, internal, 329137, 329251
-recovered pasa_asmbl_32843.p1, internal, 329431, 329575
-recovered pasa_asmbl_32843.p1, internal, 329884, 330003
-recovered pasa_asmbl_32843.p1, internal, 330372, 330497
-recovered pasa_asmbl_32843.p1, internal, 330828, 330926
-recovered pasa_asmbl_32843.p1, internal, 331208, 331290
-recovered pasa_asmbl_32843.p1, internal, 331369, 331510
-recovered pasa_asmbl_32843.p1, internal, 332681, 332800
-recovered pasa_asmbl_32843.p1, internal, 333404, 333618
-recovered pasa_asmbl_32843.p1, internal, 334406, 334530
-recovered pasa_asmbl_32843.p1, internal, 334682, 334823
-recovered pasa_asmbl_32843.p1, internal, 335254, 335404
-recovered pasa_asmbl_32843.p1, internal, 335553, 335648
-recovered pasa_asmbl_32843.p1, internal, 335840, 335943
-recovered pasa_asmbl_32843.p1, internal, 336732, 336845
-recovered pasa_asmbl_32843.p1, internal, 339021, 339228
-recovered pasa_asmbl_32843.p1, internal, 340022, 340111
-recovered pasa_asmbl_32843.p1, internal, 340477, 340579
-recovered pasa_asmbl_32843.p1, internal, 340807, 340925
-recovered pasa_asmbl_32843.p1, internal, 341087, 341200
-recovered pasa_asmbl_32843.p1, internal, 341403, 341468
-recovered pasa_asmbl_32843.p1, internal, 341943, 342009
-recovered pasa_asmbl_32843.p1, internal, 342816, 342894
-recovered pasa_asmbl_32843.p1, internal, 343097, 343172
-recovered pasa_asmbl_32843.p1, internal, 343626, 343712
-recovered pasa_asmbl_32843.p1, internal, 344071, 344181
Valid prediction for GlimmerHMM_glimmerT_52373-T1
Valid prediction for GlimmerHMM_glimmerT_52346-T1
Valid prediction for Augustus_model.g34863.t1
Valid prediction for GlimmerHMM_glimmerT_52344-T1
Valid prediction for snap_scaffold_24-snap.827-T1
Valid prediction for GlimmerHMM_glimmerT_52357-T1
Valid prediction for GlimmerHMM_glimmerT_52371-T1
Valid prediction for Augustus_model.g34865.t1
Valid prediction for HiQ_model.g34848.t1
Valid prediction for GlimmerHMM_glimmerT_52347-T1
Valid prediction for GlimmerHMM_glimmerT_52332-T1
Couldn't classify 310716, 310803
Couldn't classify 312623, 312784
Sorry, prediction pasa_asmbl_32853.p1 fails validation.
(GTG)	 CA	310716-310803	GT	GGG
(GTA)	 AG	311273-311376	GT	AGG
(GCC)	 AG	311724-311831	GT	AGG
(AGC)	 AG	312236-312331	GT	AGG
(GTG)	 AG	312623-312784	GT	AGG
-recovered pasa_asmbl_32853.p1, internal, 311273, 311376
-recovered pasa_asmbl_32853.p1, internal, 311724, 311831
-recovered pasa_asmbl_32853.p1, internal, 312236, 312331
-recovered pasa_asmbl_32853.p1, internal, 312623, 312784
Valid prediction for Augustus_model.g34856.t1
Valid prediction for Augustus_model.g34884.t1
Valid prediction for pasa_asmbl_32847.p1
Valid prediction for Augustus_model.g34880.t1
Valid prediction for snap_scaffold_24-snap.833-T1
Valid prediction for snap_scaffold_24-snap.837-T1
Valid prediction for Augustus_model.g34881.t1
Couldn't classify 373370, 373486
Sorry, prediction pasa_asmbl_32837.p1 fails validation.
(ATG)	 GC	372684-372783	GT	AAG
(GCT)	 AG	372885-373048	GT	AGG
(ATC)	 AG	373370-373486	CA	GCC
-recovered pasa_asmbl_32837.p1, initial, 372684, 372783
-recovered pasa_asmbl_32837.p1, internal, 372885, 373048
Valid prediction for snap_scaffold_24-snap.838-T1
Valid prediction for snap_scaffold_24-snap.828-T1
Valid prediction for GlimmerHMM_glimmerT_52367-T1
Valid prediction for GlimmerHMM_glimmerT_52334-T1
Couldn't classify 204397, 204552
Couldn't classify 207707, 207764
Sorry, prediction pasa_asmbl_32859.p1 fails validation.
(GTC)	 CA	204397-204552	GT	CCG
(ATT)	 AG	207100-207192	GT	AGG
(GTG)	 AG	207278-207465	GT	AGG
(GAA)	 AG	207707-207764	GT	CGG
-recovered pasa_asmbl_32859.p1, internal, 207100, 207192
-recovered pasa_asmbl_32859.p1, internal, 207278, 207465
-recovered pasa_asmbl_32859.p1, internal, 207707, 207764
Valid prediction for snap_scaffold_24-snap.854-T1
Valid prediction for GlimmerHMM_glimmerT_52330-T1
Valid prediction for Augustus_model.g34871.t1
Valid prediction for GlimmerHMM_glimmerT_52355-T1
Couldn't classify 325562, 325784
Sorry, prediction pasa_asmbl_32849.p1 fails validation.
(ATG)	 AG	324849-324907	GT	AGG
(TCT)	 AG	324997-325092	GT	AGG
(GTT)	 AG	325562-325784	GT	AGG
-recovered pasa_asmbl_32849.p1, initial, 324849, 324907
-recovered pasa_asmbl_32849.p1, internal, 324849, 324907
-recovered pasa_asmbl_32849.p1, internal, 324997, 325092
-recovered pasa_asmbl_32849.p1, internal, 325562, 325784
Valid prediction for snap_scaffold_24-snap.859-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_52368-T1
Valid prediction for GlimmerHMM_glimmerT_52326-T1
Valid prediction for Augustus_model.g34870.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8714, rend_intergenic: 8313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14213, rend_intergenic: 9704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29308, rend_intergenic: 24163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38562, rend_intergenic: 29917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72648, rend_intergenic: 39191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80664, rend_intergenic: 78146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80841, rend_intergenic: 80671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87479, rend_intergenic: 80861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89792, rend_intergenic: 87625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101798, rend_intergenic: 89859  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123379, rend_intergenic: 101819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138632, rend_intergenic: 124524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144856, rend_intergenic: 140802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148369, rend_intergenic: 145202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155569, rend_intergenic: 148395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170609, rend_intergenic: 156517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181135, rend_intergenic: 172851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192747, rend_intergenic: 183059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206128, rend_intergenic: 197827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207278, rend_intergenic: 206235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209727, rend_intergenic: 207808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 377540
-exon list size: 732


building trellis

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99.9    
-found 64 predictions from path traversal
Error with prediction: snap lend_intergenic: 8714, rend_intergenic: 8313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14213, rend_intergenic: 9704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29308, rend_intergenic: 24163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38562, rend_intergenic: 29917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72648, rend_intergenic: 39191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80664, rend_intergenic: 78146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80841, rend_intergenic: 80671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87479, rend_intergenic: 80861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89792, rend_intergenic: 87625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101798, rend_intergenic: 89859  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123379, rend_intergenic: 101819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138632, rend_intergenic: 124524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144856, rend_intergenic: 140802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148369, rend_intergenic: 145202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155569, rend_intergenic: 148395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170609, rend_intergenic: 156517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181135, rend_intergenic: 172851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192747, rend_intergenic: 183059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206128, rend_intergenic: 197827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207278, rend_intergenic: 206235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209727, rend_intergenic: 207808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 47 predictions persist after filtering for low support