-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_187148-310601

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_24-snap.59-T1
Valid prediction for Augustus_model.g34585.t1
Valid prediction for GlimmerHMM_glimmerT_51840-T1
Valid prediction for snap_scaffold_24-snap.55-T1
Valid prediction for GlimmerHMM_glimmerT_51843-T1
Valid prediction for GlimmerHMM_glimmerT_51844-T1
Valid prediction for snap_scaffold_24-snap.56-T1
Couldn't classify 116081, 116107
Couldn't classify 118759, 118881
Sorry, prediction pasa_asmbl_32003.p1 fails validation.
(GCT)	 TG	116081-116107	GT	AGG
(GGC)	 AG	116302-116397	GT	ATG
(GGT)	 AG	117123-117286	GT	AGG
(TGG)	 AG	118151-118219	GT	AGG
(GAG)	 AG	118442-118499	GT	AGG
(AGT)	 AG	118759-118881	AG	CCA
-recovered pasa_asmbl_32003.p1, internal, 116302, 116397
-recovered pasa_asmbl_32003.p1, internal, 117123, 117286
-recovered pasa_asmbl_32003.p1, internal, 118151, 118219
-recovered pasa_asmbl_32003.p1, internal, 118442, 118499
Valid prediction for snap_scaffold_24-snap.63-T1
Valid prediction for snap_scaffold_24-snap.46-T1
Valid prediction for GlimmerHMM_glimmerT_51847-T1
Valid prediction for GlimmerHMM_glimmerT_51850-T1
Valid prediction for GlimmerHMM_glimmerT_51857-T1
Valid prediction for GlimmerHMM_glimmerT_51848-T1
Valid prediction for snap_scaffold_24-snap.41-T1
Valid prediction for Augustus_model.g34584.t1
Valid prediction for snap_scaffold_24-snap.67-T1
Valid prediction for Augustus_model.g34582.t1
Valid prediction for GlimmerHMM_glimmerT_51853-T1
Valid prediction for snap_scaffold_24-snap.61-T1
Valid prediction for GlimmerHMM_glimmerT_51846-T1
Valid prediction for snap_scaffold_24-snap.57-T1
Valid prediction for GlimmerHMM_glimmerT_51860-T1
Valid prediction for snap_scaffold_24-snap.68-T1
Valid prediction for snap_scaffold_24-snap.52-T1
Valid prediction for snap_scaffold_24-snap.43-T1
Valid prediction for GlimmerHMM_glimmerT_51854-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.42-T1
Valid prediction for snap_scaffold_24-snap.49-T1
Valid prediction for snap_scaffold_24-snap.51-T1
Valid prediction for snap_scaffold_24-snap.69-T1
Valid prediction for snap_scaffold_24-snap.48-T1
Valid prediction for snap_scaffold_24-snap.53-T1
Valid prediction for snap_scaffold_24-snap.58-T1
Valid prediction for snap_scaffold_24-snap.44-T1
Valid prediction for GlimmerHMM_glimmerT_51856-T1
Valid prediction for GlimmerHMM_glimmerT_51855-T1
Valid prediction for CodingQuarry_transcript_37210-T1
Valid prediction for snap_scaffold_24-snap.65-T1
Valid prediction for GlimmerHMM_glimmerT_51849-T1
Valid prediction for HiQ_model.g34583.t1
Valid prediction for snap_scaffold_24-snap.50-T1
Valid prediction for GlimmerHMM_glimmerT_51851-T1
Valid prediction for snap_scaffold_24-snap.64-T1
Valid prediction for GlimmerHMM_glimmerT_51852-T1
Valid prediction for snap_scaffold_24-snap.66-T1
Valid prediction for snap_scaffold_24-snap.54-T1
Valid prediction for snap_scaffold_24-snap.60-T1
Valid prediction for GlimmerHMM_glimmerT_51858-T1
Valid prediction for GlimmerHMM_glimmerT_51859-T1
Valid prediction for CodingQuarry_transcript_37211-T1
Valid prediction for snap_scaffold_24-snap.45-T1
Valid prediction for GlimmerHMM_glimmerT_51845-T1
Valid prediction for snap_scaffold_24-snap.62-T1
Valid prediction for GlimmerHMM_glimmerT_51842-T1
Valid prediction for pasa_asmbl_32701.p1
Valid prediction for GlimmerHMM_glimmerT_51841-T1
Valid prediction for snap_scaffold_24-snap.47-T1
Valid prediction for CodingQuarry_transcript_37212-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9041, rend_intergenic: 7057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10149, rend_intergenic: 10009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16240, rend_intergenic: 11316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21433, rend_intergenic: 17632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41272, rend_intergenic: 38861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52687, rend_intergenic: 50774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114707, rend_intergenic: 104253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119892, rend_intergenic: 114715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 123454
-exon list size: 213


building trellis

0.5    
0.9    
1.4    
1.9    
2.3    
2.8    
3.3    
3.7    
4.2    
4.7    
5.1    
5.6    
6.0    
6.5    
7.0    
7.4    
7.9    
8.4    
8.8    
9.3    
9.8    
10.2    
10.7    
11.2    
11.6    
12.1    
12.6    
13.0    
13.5    
14.0    
14.4    
14.9    
15.3    
15.8    
16.3    
16.7    
17.2    
17.7    
18.1    
18.6    
19.1    
19.5    
20.0    
20.5    
20.9    
21.4    
21.9    
22.3    
22.8    
23.3    
23.7    
24.2    
24.7    
25.1    
25.6    
26.0    
26.5    
27.0    
27.4    
27.9    
28.4    
28.8    
29.3    
29.8    
30.2    
30.7    
31.2    
31.6    
32.1    
32.6    
33.0    
33.5    
34.0    
34.4    
34.9    
35.3    
35.8    
36.3    
36.7    
37.2    
37.7    
38.1    
38.6    
39.1    
39.5    
40.0    
40.5    
40.9    
41.4    
41.9    
42.3    
42.8    
43.3    
43.7    
44.2    
44.7    
45.1    
45.6    
46.0    
46.5    
47.0    
47.4    
47.9    
48.4    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.6    
52.1    
52.6    
53.0    
53.5    
54.0    
54.4    
54.9    
55.3    
55.8    
56.3    
56.7    
57.2    
57.7    
58.1    
58.6    
59.1    
59.5    
60.0    
60.5    
60.9    
61.4    
61.9    
62.3    
62.8    
63.3    
63.7    
64.2    
64.7    
65.1    
65.6    
66.0    
66.5    
67.0    
67.4    
67.9    
68.4    
68.8    
69.3    
69.8    
70.2    
70.7    
71.2    
71.6    
72.1    
72.6    
73.0    
73.5    
74.0    
74.4    
74.9    
75.3    
75.8    
76.3    
76.7    
77.2    
77.7    
78.1    
78.6    
79.1    
79.5    
80.0    
80.5    
80.9    
81.4    
81.9    
82.3    
82.8    
83.3    
83.7    
84.2    
84.7    
85.1    
85.6    
86.0    
86.5    
87.0    
87.4    
87.9    
88.4    
88.8    
89.3    
89.8    
90.2    
90.7    
91.2    
91.6    
92.1    
92.6    
93.0    
93.5    
94.0    
94.4    
94.9    
95.3    
95.8    
96.3    
96.7    
97.2    
97.7    
98.1    
98.6    
99.1    
99.5    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 9041, rend_intergenic: 7057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10149, rend_intergenic: 10009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16240, rend_intergenic: 11316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21433, rend_intergenic: 17632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41272, rend_intergenic: 38861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52687, rend_intergenic: 50774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114707, rend_intergenic: 104253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119892, rend_intergenic: 114715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support