-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_24/scaffold_24_1520172-1694494

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_52032-T1
Valid prediction for GlimmerHMM_glimmerT_52043-T1
Valid prediction for GlimmerHMM_glimmerT_52039-T1
Valid prediction for snap_scaffold_24-snap.398-T1
Valid prediction for snap_scaffold_24-snap.402-T1
Valid prediction for GlimmerHMM_glimmerT_52046-T1
Valid prediction for GlimmerHMM_glimmerT_52055-T1
Valid prediction for GlimmerHMM_glimmerT_52045-T1
Valid prediction for snap_scaffold_24-snap.386-T1
Valid prediction for GlimmerHMM_glimmerT_52048-T1
Valid prediction for GlimmerHMM_glimmerT_52042-T1
Valid prediction for snap_scaffold_24-snap.381-T1
Valid prediction for Augustus_model.g34685.t1
Valid prediction for snap_scaffold_24-snap.394-T1
Valid prediction for GlimmerHMM_glimmerT_52030-T1
Valid prediction for snap_scaffold_24-snap.392-T1
Valid prediction for snap_scaffold_24-snap.389-T1
Valid prediction for snap_scaffold_24-snap.387-T1
Valid prediction for snap_scaffold_24-snap.399-T1
Valid prediction for GlimmerHMM_glimmerT_52034-T1
Valid prediction for snap_scaffold_24-snap.379-T1
Valid prediction for snap_scaffold_24-snap.395-T1
Valid prediction for GlimmerHMM_glimmerT_52049-T1
Valid prediction for snap_scaffold_24-snap.390-T1
Valid prediction for snap_scaffold_24-snap.383-T1
Valid prediction for snap_scaffold_24-snap.403-T1
Valid prediction for GlimmerHMM_glimmerT_52050-T1
Valid prediction for GlimmerHMM_glimmerT_52041-T1
Valid prediction for GlimmerHMM_glimmerT_52054-T1
Valid prediction for snap_scaffold_24-snap.388-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_24-snap.404-T1
Valid prediction for GlimmerHMM_glimmerT_52052-T1
Couldn't classify 171032, 171212
Sorry, prediction pasa_asmbl_32736.p1 fails validation.
(GAG)	 AG	171032-171212	GT	AGG
(AGT)	 AG	171553-171749	TC	AGT
-recovered pasa_asmbl_32736.p1, terminal, 171553, 171749
-recovered pasa_asmbl_32736.p1, internal, 171032, 171212
Valid prediction for Augustus_model.g34683.t1
Valid prediction for Augustus_model.g34680.t1
Valid prediction for GlimmerHMM_glimmerT_52044-T1
Valid prediction for GlimmerHMM_glimmerT_52036-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_52037-T1
Valid prediction for snap_scaffold_24-snap.380-T1
Valid prediction for GlimmerHMM_glimmerT_52033-T1
Valid prediction for GlimmerHMM_glimmerT_52038-T1
Valid prediction for snap_scaffold_24-snap.385-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_52035-T1
Valid prediction for snap_scaffold_24-snap.397-T1
Valid prediction for GlimmerHMM_glimmerT_52027-T1
Valid prediction for snap_scaffold_24-snap.391-T1
Valid prediction for GlimmerHMM_glimmerT_52051-T1
Valid prediction for snap_scaffold_24-snap.382-T1
Valid prediction for Augustus_model.g34682.t1
Valid prediction for snap_scaffold_24-snap.384-T1
Valid prediction for GlimmerHMM_glimmerT_52053-T1
Valid prediction for GlimmerHMM_glimmerT_52040-T1
Valid prediction for GlimmerHMM_glimmerT_52028-T1
Valid prediction for snap_scaffold_24-snap.400-T1
Valid prediction for GlimmerHMM_glimmerT_52031-T1
Valid prediction for snap_scaffold_24-snap.401-T1
Valid prediction for GlimmerHMM_glimmerT_52029-T1
Valid prediction for Augustus_model.g34684.t1
Valid prediction for snap_scaffold_24-snap.393-T1
Valid prediction for Augustus_model.g34681.t1
Valid prediction for GlimmerHMM_glimmerT_52047-T1
Valid prediction for snap_scaffold_24-snap.396-T1
Valid prediction for Augustus_model.g34686.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6537, rend_intergenic: 2575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9675, rend_intergenic: 6664  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35431, rend_intergenic: 18847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113986, rend_intergenic: 35610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117986, rend_intergenic: 116384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120079, rend_intergenic: 118194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137840, rend_intergenic: 120717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144619, rend_intergenic: 139272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154925, rend_intergenic: 153473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164960, rend_intergenic: 155424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 174323
-exon list size: 281


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.2    
4.6    
4.9    
5.3    
5.7    
6.0    
6.4    
6.7    
7.1    
7.4    
7.8    
8.1    
8.5    
8.8    
9.2    
9.5    
9.9    
10.2    
10.6    
11.0    
11.3    
11.7    
12.0    
12.4    
12.7    
13.1    
13.4    
13.8    
14.1    
14.5    
14.8    
15.2    
15.5    
15.9    
16.3    
16.6    
17.0    
17.3    
17.7    
18.0    
18.4    
18.7    
19.1    
19.4    
19.8    
20.1    
20.5    
20.8    
21.2    
21.6    
21.9    
22.3    
22.6    
23.0    
23.3    
23.7    
24.0    
24.4    
24.7    
25.1    
25.4    
25.8    
26.1    
26.5    
26.9    
27.2    
27.6    
27.9    
28.3    
28.6    
29.0    
29.3    
29.7    
30.0    
30.4    
30.7    
31.1    
31.4    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.3    
34.6    
35.0    
35.3    
35.7    
36.0    
36.4    
36.7    
37.1    
37.5    
37.8    
38.2    
38.5    
38.9    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.3    
41.7    
42.0    
42.4    
42.8    
43.1    
43.5    
43.8    
44.2    
44.5    
44.9    
45.2    
45.6    
45.9    
46.3    
46.6    
47.0    
47.3    
47.7    
48.1    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
51.9    
52.3    
52.7    
53.0    
53.4    
53.7    
54.1    
54.4    
54.8    
55.1    
55.5    
55.8    
56.2    
56.5    
56.9    
57.2    
57.6    
58.0    
58.3    
58.7    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.1    
61.5    
61.8    
62.2    
62.5    
62.9    
63.3    
63.6    
64.0    
64.3    
64.7    
65.0    
65.4    
65.7    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.6    
68.9    
69.3    
69.6    
70.0    
70.3    
70.7    
71.0    
71.4    
71.7    
72.1    
72.4    
72.8    
73.1    
73.5    
73.9    
74.2    
74.6    
74.9    
75.3    
75.6    
76.0    
76.3    
76.7    
77.0    
77.4    
77.7    
78.1    
78.4    
78.8    
79.2    
79.5    
79.9    
80.2    
80.6    
80.9    
81.3    
81.6    
82.0    
82.3    
82.7    
83.0    
83.4    
83.7    
84.1    
84.5    
84.8    
85.2    
85.5    
85.9    
86.2    
86.6    
86.9    
87.3    
87.6    
88.0    
88.3    
88.7    
89.0    
89.4    
89.8    
90.1    
90.5    
90.8    
91.2    
91.5    
91.9    
92.2    
92.6    
92.9    
93.3    
93.6    
94.0    
94.3    
94.7    
95.1    
95.4    
95.8    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 6537, rend_intergenic: 2575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9675, rend_intergenic: 6664  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35431, rend_intergenic: 18847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113986, rend_intergenic: 35610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117986, rend_intergenic: 116384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120079, rend_intergenic: 118194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137840, rend_intergenic: 120717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144619, rend_intergenic: 139272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154925, rend_intergenic: 153473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164960, rend_intergenic: 155424  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 163583 - 174323
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support