-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2392

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 103, 242
Couldn't classify 800, 929
Sorry, prediction Augustus_model.g40876.t1 fails validation.
(CAG)	 AG	103-242	GT	AGG
(CAT)	 AG	800-929	GT	AGG
-recovered Augustus_model.g40876.t1, internal, 103, 242
-recovered Augustus_model.g40876.t1, internal, 800, 929
Valid prediction for GlimmerHMM_glimmerT_61594-T1
Couldn't classify 93, 242
Sorry, prediction snap_scaffold_2392-snap.1-T1 fails validation.
(ACC)	 AG	93-242	GT	AGG
(CAG)	 AG	281-326	GT	TGG
(AAC)	 AG	609-929	GT	AGG
(CCT)	 AG	996-1042	AA	AAA
-recovered snap_scaffold_2392-snap.1-T1, terminal, 996, 1042
-recovered snap_scaffold_2392-snap.1-T1, internal, 93, 242
-recovered snap_scaffold_2392-snap.1-T1, internal, 281, 326
-recovered snap_scaffold_2392-snap.1-T1, internal, 609, 929

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1323
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support