-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_239

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_239-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60057-T1
Valid prediction for snap_scaffold_239-snap.1-T1
Couldn't classify 265, 428
Sorry, prediction snap_scaffold_239-snap.3-T1 fails validation.
(CCC)	 AG	265-428	GT	GGG
(CGG)	 AG	1303-1474	GT	ACG
(GCC)	 AG	3426-3616	GT	TGG
(TTC)	 AG	4625-4679	TT	GAT
-recovered snap_scaffold_239-snap.3-T1, terminal, 4625, 4679
-recovered snap_scaffold_239-snap.3-T1, internal, 265, 428
-recovered snap_scaffold_239-snap.3-T1, internal, 1303, 1474
-recovered snap_scaffold_239-snap.3-T1, internal, 3426, 3616
Valid prediction for GlimmerHMM_glimmerT_60056-T1
Valid prediction for Augustus_model.g39770.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6241, rend_intergenic: 4515  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9193
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6241, rend_intergenic: 4515  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support