-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2380

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 343, 489
Couldn't classify 1169, 1230
Sorry, prediction Augustus_model.g40868.t1 fails validation.
(AGC)	 AG	343-489	GT	AGG
(GGC)	 AG	968-1054	GT	CAG
(GAG)	 AG	1169-1230	GT	AGG
-recovered Augustus_model.g40868.t1, internal, 343, 489
-recovered Augustus_model.g40868.t1, internal, 968, 1054
-recovered Augustus_model.g40868.t1, internal, 1169, 1230
Couldn't classify 1169, 1230
Sorry, prediction GlimmerHMM_glimmerT_61586-T1 fails validation.
(ATG)	 GC	346-489	GT	AGG
(GGC)	 AG	968-1054	GT	CAG
(GAG)	 AG	1169-1230	GT	AGG
-recovered GlimmerHMM_glimmerT_61586-T1, initial, 346, 489
-recovered GlimmerHMM_glimmerT_61586-T1, internal, 968, 1054
-recovered GlimmerHMM_glimmerT_61586-T1, internal, 1169, 1230

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1334
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support