-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2373 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +) -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 351, 407 Sorry, prediction GlimmerHMM_glimmerT_61583-T1 fails validation. (ACA) AG 351-407 GT TGG (CAG) AG 498-561 GT GCG (TCT) AG 1184-1283 GT AGG -recovered GlimmerHMM_glimmerT_61583-T1, terminal, 1184, 1283 -recovered GlimmerHMM_glimmerT_61583-T1, internal, 351, 407 -recovered GlimmerHMM_glimmerT_61583-T1, internal, 498, 561 -recovered GlimmerHMM_glimmerT_61583-T1, internal, 1184, 1283 Couldn't classify 135, 178 Couldn't classify 1184, 1279 Sorry, prediction Augustus_model.g40866.t1 fails validation. (GAT) AG 135-178 GT AGG (ACA) AG 351-407 GT TGG (CAG) AG 498-561 GT GCG (TCT) AG 1184-1279 GT AAG -recovered Augustus_model.g40866.t1, internal, 135, 178 -recovered Augustus_model.g40866.t1, internal, 351, 407 -recovered Augustus_model.g40866.t1, internal, 498, 561 -recovered Augustus_model.g40866.t1, internal, 1184, 1279 Couldn't classify 64, 178 Couldn't classify 1184, 1279 Sorry, prediction snap_scaffold_2373-snap.1-T1 fails validation. (GAC) AG 64-178 GT AGG (ACA) AG 351-407 GT TGG (ATG) AG 501-561 GT GCG (TCT) AG 1184-1279 GT AAG -recovered snap_scaffold_2373-snap.1-T1, initial, 501, 561 -recovered snap_scaffold_2373-snap.1-T1, internal, 64, 178 -recovered snap_scaffold_2373-snap.1-T1, internal, 351, 407 -recovered snap_scaffold_2373-snap.1-T1, internal, 501, 561 -recovered snap_scaffold_2373-snap.1-T1, internal, 1184, 1279 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 1339 -exon list size: 12 building trellis 7.1 14.3 21.4 28.6 35.7 42.9 50.0 57.1 64.3 71.4 78.6 85.7 92.9 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support