-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_237

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2194, 2336
Sorry, prediction snap_scaffold_237-snap.2-T1 fails validation.
(GAG)	 AG	2194-2336	GT	AGG
(GAG)	 AG	4852-5059	GT	AAG
(CTT)	 AG	6484-6708	GT	AGG
(TTA)	 AG	7741-7797	CG	GAC
-recovered snap_scaffold_237-snap.2-T1, terminal, 7741, 7797
-recovered snap_scaffold_237-snap.2-T1, internal, 2194, 2336
-recovered snap_scaffold_237-snap.2-T1, internal, 4852, 5059
-recovered snap_scaffold_237-snap.2-T1, internal, 6484, 6708
Couldn't classify 6492, 6708
Sorry, prediction GlimmerHMM_glimmerT_60054-T1 fails validation.
(ATG)	 TG	1439-1471	GT	GGG
(GAG)	 AG	2194-2336	GT	AGG
(TGA)	 AG	6492-6708	GT	AGG
-recovered GlimmerHMM_glimmerT_60054-T1, initial, 1439, 1471
-recovered GlimmerHMM_glimmerT_60054-T1, internal, 2194, 2336
-recovered GlimmerHMM_glimmerT_60054-T1, internal, 6492, 6708

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_237-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9213
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support