-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2366

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 590, 752
Sorry, prediction Augustus_model.g40863.t1 fails validation.
(GGT)	 AG	590-752	GT	TGG
(ACA)	 AG	1074-1294	GA	AGG
-recovered Augustus_model.g40863.t1, terminal, 1074, 1294
-recovered Augustus_model.g40863.t1, internal, 590, 752
Couldn't classify 1074, 1255
Sorry, prediction GlimmerHMM_glimmerT_61580-T1 fails validation.
(ATG)	 TC	946-979	GT	AGG
(ACA)	 AG	1074-1255	GT	AGG
-recovered GlimmerHMM_glimmerT_61580-T1, initial, 946, 979
-recovered GlimmerHMM_glimmerT_61580-T1, internal, 1074, 1255
Couldn't classify 98, 752
Couldn't classify 1074, 1255
Sorry, prediction snap_scaffold_2366-snap.1-T1 fails validation.
(CTG)	 AG	98-752	GT	TGG
(ACA)	 AG	1074-1255	GT	AGG
-recovered snap_scaffold_2366-snap.1-T1, internal, 98, 752
-recovered snap_scaffold_2366-snap.1-T1, internal, 1074, 1255
Valid prediction for GlimmerHMM_glimmerT_61579-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1343
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support