-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_236

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60052-T1
Valid prediction for GlimmerHMM_glimmerT_60053-T1
Couldn't classify 1931, 2306
Couldn't classify 7998, 8023
Sorry, prediction snap_scaffold_236-snap.1-T1 fails validation.
(GAT)	 AG	1931-2306	GT	AGG
(ATG)	 AG	2376-2603	GT	AGG
(GAT)	 AG	7998-8023	GT	TTG
add_exon() Sorry, snap_scaffold_236-snap.1-T1 2376-2603-initial-1 is invalid.
-recovered snap_scaffold_236-snap.1-T1, initial, 2376, 2603
add_exon() Sorry, snap_scaffold_236-snap.1-T1 2376-2603-terminal-1 is invalid.
-recovered snap_scaffold_236-snap.1-T1, terminal, 2376, 2603
-recovered snap_scaffold_236-snap.1-T1, internal, 1931, 2306
-recovered snap_scaffold_236-snap.1-T1, internal, 2376, 2603
-recovered snap_scaffold_236-snap.1-T1, internal, 7998, 8023

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1130, 1166
Couldn't classify 7108, 7276
Sorry, prediction snap_scaffold_236-snap.2-T1 fails validation.
(CCC)	 AG	1130-1166	GT	TAG
(CTG)	 AG	5666-5751	GT	AGG
(GAC)	 AG	7108-7276	GT	AGG
-recovered snap_scaffold_236-snap.2-T1, internal, 1130, 1166
-recovered snap_scaffold_236-snap.2-T1, internal, 5666, 5751
-recovered snap_scaffold_236-snap.2-T1, internal, 7108, 7276

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8023, rend_intergenic: 1964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9239
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 8023, rend_intergenic: 1964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support