-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2357

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 129, 365
Sorry, prediction Augustus_model.g40859.t1 fails validation.
(CTC)	 AG	129-365	GT	AGG
(GTC)	 AG	841-955	GT	CTG
(TTG)	 AG	1134-1210	TC	GAT
-recovered Augustus_model.g40859.t1, terminal, 1134, 1210
-recovered Augustus_model.g40859.t1, internal, 129, 365
-recovered Augustus_model.g40859.t1, internal, 841, 955
Valid prediction for GlimmerHMM_glimmerT_61572-T1
Couldn't classify 129, 365
Couldn't classify 1134, 1204
Sorry, prediction snap_scaffold_2357-snap.1-T1 fails validation.
(CTC)	 AG	129-365	GT	AGG
(GTC)	 AG	841-919	GT	AGG
(TTG)	 AG	1134-1204	GT	CGG
-recovered snap_scaffold_2357-snap.1-T1, internal, 129, 365
-recovered snap_scaffold_2357-snap.1-T1, internal, 841, 919
-recovered snap_scaffold_2357-snap.1-T1, internal, 1134, 1204

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1353
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support