-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2342

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61566-T1
Couldn't classify 1043, 1186
Sorry, prediction Augustus_model.g40856.t1 fails validation.
(ATG)	 GT	57-142	GT	CAG
(ATC)	 AG	1043-1186	GT	CGG
-recovered Augustus_model.g40856.t1, initial, 57, 142
-recovered Augustus_model.g40856.t1, internal, 1043, 1186
Couldn't classify 1043, 1186
Sorry, prediction snap_scaffold_2342-snap.1-T1 fails validation.
(ATG)	 TA	829-884	GT	CAG
(ATC)	 AG	1043-1186	GT	CGG
-recovered snap_scaffold_2342-snap.1-T1, initial, 829, 884
-recovered snap_scaffold_2342-snap.1-T1, internal, 1043, 1186

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1366
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support