-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_233

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 149, 337
Couldn't classify 6686, 6886
Sorry, prediction snap_scaffold_233-snap.2-T1 fails validation.
(CTT)	 AG	149-337	GT	AGG
(GAG)	 AG	624-991	GT	GAG
(GCT)	 AG	5927-6082	GT	CCG
(AGC)	 AG	6686-6886	GT	AGG
-recovered snap_scaffold_233-snap.2-T1, internal, 149, 337
-recovered snap_scaffold_233-snap.2-T1, internal, 624, 991
-recovered snap_scaffold_233-snap.2-T1, internal, 5927, 6082
-recovered snap_scaffold_233-snap.2-T1, internal, 6686, 6886

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 8988, 9145
Sorry, prediction snap_scaffold_233-snap.1-T1 fails validation.
(ATG)	 AC	4609-4653	GT	TGG
(GGG)	 AG	8988-9145	GT	CAG
-recovered snap_scaffold_233-snap.1-T1, initial, 4609, 4653
-recovered snap_scaffold_233-snap.1-T1, internal, 8988, 9145
Valid prediction for GlimmerHMM_glimmerT_60047-T1
Valid prediction for GlimmerHMM_glimmerT_60048-T1
Couldn't classify 2454, 2480
Sorry, prediction snap_scaffold_233-snap.3-T1 fails validation.
(GGC)	 AG	2454-2480	GT	TAG
(GAC)	 AG	2512-2523	GT	AGG
(CAT)	 AG	3211-3483	GT	CGG
(GAG)	 AG	4139-4161	GG	AGG
-recovered snap_scaffold_233-snap.3-T1, terminal, 4139, 4161
-recovered snap_scaffold_233-snap.3-T1, internal, 2454, 2480
-recovered snap_scaffold_233-snap.3-T1, internal, 2512, 2523
-recovered snap_scaffold_233-snap.3-T1, internal, 3211, 3483

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4677, rend_intergenic: 149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6886, rend_intergenic: 5125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9285
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4677, rend_intergenic: 149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6886, rend_intergenic: 5125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support