-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2320

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61562-T1
Couldn't classify 395, 612
Sorry, prediction snap_scaffold_2320-snap.1-T1 fails validation.
(ATG)	 AG	58-107	GT	AGG
(GGC)	 AG	395-612	GT	AGG
add_exon() Sorry, snap_scaffold_2320-snap.1-T1 58-107-initial-1 is invalid.
-recovered snap_scaffold_2320-snap.1-T1, initial, 58, 107
-recovered snap_scaffold_2320-snap.1-T1, internal, 58, 107
-recovered snap_scaffold_2320-snap.1-T1, internal, 395, 612
Valid prediction for Augustus_model.g40851.t1
add_exon() Sorry, Augustus_model.g40851.t1 58-107-initial-1 is invalid.
add_exon() Sorry, Augustus_model.g40851.t1 395-616-terminal-3 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1385
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support