-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_232

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 7627, 7746
Sorry, prediction snap_scaffold_232-snap.3-T1 fails validation.
(ATG)	 AG	6830-7013	GT	GGG
(CAG)	 AG	7627-7746	GT	CGG
-recovered snap_scaffold_232-snap.3-T1, initial, 6830, 7013
-recovered snap_scaffold_232-snap.3-T1, internal, 6830, 7013
-recovered snap_scaffold_232-snap.3-T1, internal, 7627, 7746
Couldn't classify 102, 217
Sorry, prediction snap_scaffold_232-snap.1-T1 fails validation.
(TCA)	 AG	102-217	GT	AGG
(CGG)	 AG	2952-3036	GT	AGG
(CTC)	 AG	4722-4770	GT	TGG
(GGT)	 AG	6499-6525	AG	AGA
-recovered snap_scaffold_232-snap.1-T1, terminal, 6499, 6525
-recovered snap_scaffold_232-snap.1-T1, internal, 102, 217
-recovered snap_scaffold_232-snap.1-T1, internal, 2952, 3036
-recovered snap_scaffold_232-snap.1-T1, internal, 4722, 4770

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 767, 849
Sorry, prediction GlimmerHMM_glimmerT_60046-T1 fails validation.
(AGC)	 AG	767-849	GT	TGG
(ACG)	 AG	9042-9089	CC	GAC
-recovered GlimmerHMM_glimmerT_60046-T1, terminal, 9042, 9089
-recovered GlimmerHMM_glimmerT_60046-T1, internal, 767, 849
Couldn't classify 767, 895
Couldn't classify 5455, 5550
Sorry, prediction snap_scaffold_232-snap.2-T1 fails validation.
(AGC)	 AG	767-895	GT	AGG
(TAA)	 AG	4562-5260	GT	CGG
(ACG)	 AG	5364-5413	GT	TCG
(AAT)	 AG	5455-5550	GT	TGG
add_exon() Sorry, snap_scaffold_232-snap.2-T1 767-895-terminal-1 is invalid.
-recovered snap_scaffold_232-snap.2-T1, terminal, 767, 895
-recovered snap_scaffold_232-snap.2-T1, internal, 767, 895
-recovered snap_scaffold_232-snap.2-T1, internal, 4562, 5260
-recovered snap_scaffold_232-snap.2-T1, internal, 5364, 5413
-recovered snap_scaffold_232-snap.2-T1, internal, 5455, 5550

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6525, rend_intergenic: 3739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8522, rend_intergenic: 6830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9288
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6525, rend_intergenic: 3739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8522, rend_intergenic: 6830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support