-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_231

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9053, 9143
Sorry, prediction snap_scaffold_231-snap.2-T1 fails validation.
(ATG)	 TG	7140-7270	GT	CAG
(GAG)	 AG	8656-8787	GT	GGG
(GCG)	 AG	9053-9143	GT	ACG
-recovered snap_scaffold_231-snap.2-T1, initial, 7140, 7270
-recovered snap_scaffold_231-snap.2-T1, internal, 8656, 8787
-recovered snap_scaffold_231-snap.2-T1, internal, 9053, 9143

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39768.t1
Valid prediction for GlimmerHMM_glimmerT_60042-T1
Couldn't classify 5158, 5202
Sorry, prediction pasa_asmbl_31982.p1 fails validation.
(GAC)	 GA	5158-5202	GT	AGG
(GAG)	 AG	5346-5473	GT	AAG
(GTA)	 AG	5692-5851	CA	AAC
-recovered pasa_asmbl_31982.p1, terminal, 5692, 5851
-recovered pasa_asmbl_31982.p1, internal, 5346, 5473
Valid prediction for GlimmerHMM_glimmerT_60043-T1
Valid prediction for GlimmerHMM_glimmerT_60045-T1
Valid prediction for CodingQuarry_transcript_35822-T1
Valid prediction for snap_scaffold_231-snap.1-T1
Valid prediction for Augustus_model.g39767.t1
Valid prediction for GlimmerHMM_glimmerT_60044-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9289
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support