-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_23/scaffold_23_8637459-8774142

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g34450.t1
Valid prediction for GlimmerHMM_glimmerT_51497-T1
Valid prediction for snap_scaffold_23-snap.1681-T1
Valid prediction for GlimmerHMM_glimmerT_51496-T1
Valid prediction for GlimmerHMM_glimmerT_51494-T1
Valid prediction for snap_scaffold_23-snap.1661-T1
Valid prediction for snap_scaffold_23-snap.1653-T1
Valid prediction for GlimmerHMM_glimmerT_51506-T1
Couldn't classify 127475, 127707
Sorry, prediction pasa_asmbl_31776.p1 fails validation.
(GGG)	 CA	127475-127707	GT	AGG
(CCC)	 AG	128486-128564	GT	AGG
(TCA)	 AG	129354-129472	GT	AAG
(GGA)	 AG	129938-130087	GT	GGG
(GGT)	 AG	130813-130861	AG	GAA
-recovered pasa_asmbl_31776.p1, terminal, 130813, 130861
-recovered pasa_asmbl_31776.p1, internal, 128486, 128564
-recovered pasa_asmbl_31776.p1, internal, 129354, 129472
-recovered pasa_asmbl_31776.p1, internal, 129938, 130087
Valid prediction for GlimmerHMM_glimmerT_51507-T1
Valid prediction for snap_scaffold_23-snap.1660-T1
Valid prediction for snap_scaffold_23-snap.1654-T1
Valid prediction for snap_scaffold_23-snap.1676-T1
Valid prediction for snap_scaffold_23-snap.1665-T1
Valid prediction for snap_scaffold_23-snap.1674-T1
Couldn't classify 117616, 117720
Sorry, prediction pasa_asmbl_31774.p1 fails validation.
(CTG)	 TC	117616-117720	GT	AGG
(AAC)	 AG	118064-118229	GT	CGG
(ACA)	 AG	118361-118473	GT	GGG
(GTG)	 AG	118907-119084	GT	TAG
(ACA)	 AG	119433-119597	GT	ACG
(TGT)	 AG	120091-120260	GT	AGG
(GTT)	 AG	120421-120512	GT	AGG
(CGT)	 AG	121237-121516	CG	AGC
-recovered pasa_asmbl_31774.p1, terminal, 121237, 121516
-recovered pasa_asmbl_31774.p1, internal, 118064, 118229
-recovered pasa_asmbl_31774.p1, internal, 118361, 118473
-recovered pasa_asmbl_31774.p1, internal, 118907, 119084
-recovered pasa_asmbl_31774.p1, internal, 119433, 119597
-recovered pasa_asmbl_31774.p1, internal, 120091, 120260
-recovered pasa_asmbl_31774.p1, internal, 120421, 120512
Valid prediction for snap_scaffold_23-snap.1667-T1
Valid prediction for snap_scaffold_23-snap.1656-T1
Valid prediction for Augustus_model.g34451.t1
Valid prediction for snap_scaffold_23-snap.1668-T1
Valid prediction for snap_scaffold_23-snap.1662-T1
Valid prediction for GlimmerHMM_glimmerT_51505-T1
Valid prediction for snap_scaffold_23-snap.1671-T1
Valid prediction for GlimmerHMM_glimmerT_51495-T1
Valid prediction for snap_scaffold_23-snap.1664-T1
Valid prediction for snap_scaffold_23-snap.1670-T1
Valid prediction for snap_scaffold_23-snap.1678-T1
Valid prediction for snap_scaffold_23-snap.1659-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_51500-T1
Valid prediction for snap_scaffold_23-snap.1652-T1
Valid prediction for snap_scaffold_23-snap.1675-T1
Valid prediction for snap_scaffold_23-snap.1683-T1
Valid prediction for GlimmerHMM_glimmerT_51498-T1
Valid prediction for snap_scaffold_23-snap.1672-T1
Valid prediction for snap_scaffold_23-snap.1658-T1
Valid prediction for snap_scaffold_23-snap.1669-T1
Valid prediction for GlimmerHMM_glimmerT_51501-T1
Valid prediction for GlimmerHMM_glimmerT_51504-T1
Valid prediction for GlimmerHMM_glimmerT_51503-T1
Valid prediction for snap_scaffold_23-snap.1673-T1
Valid prediction for GlimmerHMM_glimmerT_51502-T1
Valid prediction for snap_scaffold_23-snap.1655-T1
Valid prediction for snap_scaffold_23-snap.1666-T1
Valid prediction for GlimmerHMM_glimmerT_51499-T1
Valid prediction for GlimmerHMM_glimmerT_51492-T1
Valid prediction for GlimmerHMM_glimmerT_51493-T1
Valid prediction for snap_scaffold_23-snap.1682-T1
Valid prediction for snap_scaffold_23-snap.1657-T1
Valid prediction for snap_scaffold_23-snap.1679-T1
Valid prediction for Augustus_model.g34449.t1
Valid prediction for Augustus_model.g34448.t1
Valid prediction for snap_scaffold_23-snap.1663-T1
Valid prediction for snap_scaffold_23-snap.1680-T1
Valid prediction for snap_scaffold_23-snap.1677-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5287, rend_intergenic: 4041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66740, rend_intergenic: 65497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80360, rend_intergenic: 70836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103255, rend_intergenic: 100572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106709, rend_intergenic: 104846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119014, rend_intergenic: 115946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122676, rend_intergenic: 120029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127647, rend_intergenic: 124628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130905, rend_intergenic: 127669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 136684
-exon list size: 188


building trellis

0.5    
1.1    
1.6    
2.1    
2.6    
3.2    
3.7    
4.2    
4.7    
5.3    
5.8    
6.3    
6.8    
7.4    
7.9    
8.4    
8.9    
9.5    
10.0    
10.5    
11.1    
11.6    
12.1    
12.6    
13.2    
13.7    
14.2    
14.7    
15.3    
15.8    
16.3    
16.8    
17.4    
17.9    
18.4    
18.9    
19.5    
20.0    
20.5    
21.1    
21.6    
22.1    
22.6    
23.2    
23.7    
24.2    
24.7    
25.3    
25.8    
26.3    
26.8    
27.4    
27.9    
28.4    
28.9    
29.5    
30.0    
30.5    
31.1    
31.6    
32.1    
32.6    
33.2    
33.7    
34.2    
34.7    
35.3    
35.8    
36.3    
36.8    
37.4    
37.9    
38.4    
38.9    
39.5    
40.0    
40.5    
41.1    
41.6    
42.1    
42.6    
43.2    
43.7    
44.2    
44.7    
45.3    
45.8    
46.3    
46.8    
47.4    
47.9    
48.4    
48.9    
49.5    
50.0    
50.5    
51.1    
51.6    
52.1    
52.6    
53.2    
53.7    
54.2    
54.7    
55.3    
55.8    
56.3    
56.8    
57.4    
57.9    
58.4    
58.9    
59.5    
60.0    
60.5    
61.1    
61.6    
62.1    
62.6    
63.2    
63.7    
64.2    
64.7    
65.3    
65.8    
66.3    
66.8    
67.4    
67.9    
68.4    
68.9    
69.5    
70.0    
70.5    
71.1    
71.6    
72.1    
72.6    
73.2    
73.7    
74.2    
74.7    
75.3    
75.8    
76.3    
76.8    
77.4    
77.9    
78.4    
78.9    
79.5    
80.0    
80.5    
81.1    
81.6    
82.1    
82.6    
83.2    
83.7    
84.2    
84.7    
85.3    
85.8    
86.3    
86.8    
87.4    
87.9    
88.4    
88.9    
89.5    
90.0    
90.5    
91.1    
91.6    
92.1    
92.6    
93.2    
93.7    
94.2    
94.7    
95.3    
95.8    
96.3    
96.8    
97.4    
97.9    
98.4    
98.9    
99.5    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 5287, rend_intergenic: 4041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66740, rend_intergenic: 65497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80360, rend_intergenic: 70836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103255, rend_intergenic: 100572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106709, rend_intergenic: 104846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119014, rend_intergenic: 115946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122676, rend_intergenic: 120029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127647, rend_intergenic: 124628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130905, rend_intergenic: 127669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support