-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_23/scaffold_23_8478316-8641498

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_23-snap.1625-T1
Valid prediction for GlimmerHMM_glimmerT_51469-T1
Valid prediction for Augustus_model.g34442.t1
Valid prediction for Augustus_model.g34435.t1
Valid prediction for snap_scaffold_23-snap.1646-T1
Valid prediction for GlimmerHMM_glimmerT_51486-T1
Valid prediction for GlimmerHMM_glimmerT_51484-T1
Valid prediction for GlimmerHMM_glimmerT_51477-T1
Valid prediction for snap_scaffold_23-snap.1634-T1
Valid prediction for snap_scaffold_23-snap.1623-T1
Valid prediction for snap_scaffold_23-snap.1651-T1
Valid prediction for Augustus_model.g34443.t1
Valid prediction for GlimmerHMM_glimmerT_51480-T1
Valid prediction for snap_scaffold_23-snap.1616-T1
Valid prediction for snap_scaffold_23-snap.1635-T1
Valid prediction for Augustus_model.g34433.t1
Valid prediction for GlimmerHMM_glimmerT_51483-T1
Valid prediction for snap_scaffold_23-snap.1639-T1
Valid prediction for snap_scaffold_23-snap.1637-T1
Valid prediction for Augustus_model.g34437.t1
Valid prediction for snap_scaffold_23-snap.1618-T1
Valid prediction for snap_scaffold_23-snap.1649-T1
Valid prediction for GlimmerHMM_glimmerT_51487-T1
Valid prediction for Augustus_model.g34438.t1
Valid prediction for GlimmerHMM_glimmerT_51479-T1
Valid prediction for GlimmerHMM_glimmerT_51489-T1
Valid prediction for Augustus_model.g34440.t1
Valid prediction for snap_scaffold_23-snap.1640-T1
Valid prediction for GlimmerHMM_glimmerT_51472-T1
Valid prediction for snap_scaffold_23-snap.1632-T1
Valid prediction for snap_scaffold_23-snap.1620-T1
Valid prediction for snap_scaffold_23-snap.1643-T1
Valid prediction for GlimmerHMM_glimmerT_51474-T1
Valid prediction for snap_scaffold_23-snap.1645-T1
Valid prediction for Augustus_model.g34446.t1
Valid prediction for GlimmerHMM_glimmerT_51488-T1
Valid prediction for snap_scaffold_23-snap.1636-T1
Valid prediction for Augustus_model.g34439.t1
Valid prediction for snap_scaffold_23-snap.1631-T1
Valid prediction for snap_scaffold_23-snap.1647-T1
Valid prediction for Augustus_model.g34445.t1
Valid prediction for Augustus_model.g34447.t1
Valid prediction for GlimmerHMM_glimmerT_51470-T1
Valid prediction for snap_scaffold_23-snap.1648-T1
Valid prediction for snap_scaffold_23-snap.1628-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_23-snap.1644-T1
Valid prediction for snap_scaffold_23-snap.1615-T1
Valid prediction for snap_scaffold_23-snap.1638-T1
Valid prediction for Augustus_model.g34434.t1
Valid prediction for snap_scaffold_23-snap.1621-T1
Valid prediction for GlimmerHMM_glimmerT_51481-T1
Valid prediction for snap_scaffold_23-snap.1627-T1
Valid prediction for snap_scaffold_23-snap.1619-T1
Valid prediction for Augustus_model.g34436.t1
Valid prediction for snap_scaffold_23-snap.1633-T1
Valid prediction for snap_scaffold_23-snap.1617-T1
Valid prediction for snap_scaffold_23-snap.1614-T1
Valid prediction for snap_scaffold_23-snap.1641-T1
Valid prediction for GlimmerHMM_glimmerT_51468-T1
Valid prediction for Augustus_model.g34441.t1
Valid prediction for GlimmerHMM_glimmerT_51482-T1
Valid prediction for snap_scaffold_23-snap.1650-T1
Valid prediction for snap_scaffold_23-snap.1630-T1
Valid prediction for GlimmerHMM_glimmerT_51473-T1
Valid prediction for GlimmerHMM_glimmerT_51491-T1
Valid prediction for GlimmerHMM_glimmerT_51485-T1
Valid prediction for snap_scaffold_23-snap.1624-T1
Valid prediction for GlimmerHMM_glimmerT_51478-T1
Valid prediction for snap_scaffold_23-snap.1626-T1
Valid prediction for GlimmerHMM_glimmerT_51475-T1
Valid prediction for GlimmerHMM_glimmerT_51471-T1
Valid prediction for GlimmerHMM_glimmerT_51476-T1
Valid prediction for snap_scaffold_23-snap.1629-T1
Valid prediction for snap_scaffold_23-snap.1613-T1
Valid prediction for GlimmerHMM_glimmerT_51490-T1
Valid prediction for Augustus_model.g34444.t1
Valid prediction for GlimmerHMM_glimmerT_51467-T1
Valid prediction for snap_scaffold_23-snap.1642-T1
Valid prediction for snap_scaffold_23-snap.1622-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22818, rend_intergenic: 18281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26527, rend_intergenic: 25596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36335, rend_intergenic: 27079  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44478, rend_intergenic: 43643  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47607, rend_intergenic: 46909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69180, rend_intergenic: 60472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82604, rend_intergenic: 74210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84808, rend_intergenic: 82657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87090, rend_intergenic: 85066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98231, rend_intergenic: 97935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117900, rend_intergenic: 115891  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130242, rend_intergenic: 125630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158634, rend_intergenic: 156997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 163183
-exon list size: 223


building trellis

0.4    
0.9    
1.3    
1.8    
2.2    
2.7    
3.1    
3.6    
4.0    
4.4    
4.9    
5.3    
5.8    
6.2    
6.7    
7.1    
7.6    
8.0    
8.4    
8.9    
9.3    
9.8    
10.2    
10.7    
11.1    
11.6    
12.0    
12.4    
12.9    
13.3    
13.8    
14.2    
14.7    
15.1    
15.6    
16.0    
16.4    
16.9    
17.3    
17.8    
18.2    
18.7    
19.1    
19.6    
20.0    
20.4    
20.9    
21.3    
21.8    
22.2    
22.7    
23.1    
23.6    
24.0    
24.4    
24.9    
25.3    
25.8    
26.2    
26.7    
27.1    
27.6    
28.0    
28.4    
28.9    
29.3    
29.8    
30.2    
30.7    
31.1    
31.6    
32.0    
32.4    
32.9    
33.3    
33.8    
34.2    
34.7    
35.1    
35.6    
36.0    
36.4    
36.9    
37.3    
37.8    
38.2    
38.7    
39.1    
39.6    
40.0    
40.4    
40.9    
41.3    
41.8    
42.2    
42.7    
43.1    
43.6    
44.0    
44.4    
44.9    
45.3    
45.8    
46.2    
46.7    
47.1    
47.6    
48.0    
48.4    
48.9    
49.3    
49.8    
50.2    
50.7    
51.1    
51.6    
52.0    
52.4    
52.9    
53.3    
53.8    
54.2    
54.7    
55.1    
55.6    
56.0    
56.4    
56.9    
57.3    
57.8    
58.2    
58.7    
59.1    
59.6    
60.0    
60.4    
60.9    
61.3    
61.8    
62.2    
62.7    
63.1    
63.6    
64.0    
64.4    
64.9    
65.3    
65.8    
66.2    
66.7    
67.1    
67.6    
68.0    
68.4    
68.9    
69.3    
69.8    
70.2    
70.7    
71.1    
71.6    
72.0    
72.4    
72.9    
73.3    
73.8    
74.2    
74.7    
75.1    
75.6    
76.0    
76.4    
76.9    
77.3    
77.8    
78.2    
78.7    
79.1    
79.6    
80.0    
80.4    
80.9    
81.3    
81.8    
82.2    
82.7    
83.1    
83.6    
84.0    
84.4    
84.9    
85.3    
85.8    
86.2    
86.7    
87.1    
87.6    
88.0    
88.4    
88.9    
89.3    
89.8    
90.2    
90.7    
91.1    
91.6    
92.0    
92.4    
92.9    
93.3    
93.8    
94.2    
94.7    
95.1    
95.6    
96.0    
96.4    
96.9    
97.3    
97.8    
98.2    
98.7    
99.1    
99.6    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 22818, rend_intergenic: 18281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26527, rend_intergenic: 25596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36335, rend_intergenic: 27079  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44478, rend_intergenic: 43643  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47607, rend_intergenic: 46909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69180, rend_intergenic: 60472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82604, rend_intergenic: 74210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84808, rend_intergenic: 82657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87090, rend_intergenic: 85066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98231, rend_intergenic: 97935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117900, rend_intergenic: 115891  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130242, rend_intergenic: 125630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158634, rend_intergenic: 156997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support