-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_23/scaffold_23_6374743-6536130

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_23-snap.1150-T1
Valid prediction for snap_scaffold_23-snap.1171-T1
Valid prediction for GlimmerHMM_glimmerT_51154-T1
Valid prediction for Augustus_model.g34225.t1
Valid prediction for snap_scaffold_23-snap.1158-T1
Valid prediction for snap_scaffold_23-snap.1169-T1
Valid prediction for GlimmerHMM_glimmerT_51166-T1
Valid prediction for snap_scaffold_23-snap.1159-T1
Valid prediction for snap_scaffold_23-snap.1157-T1
Valid prediction for GlimmerHMM_glimmerT_51168-T1
Valid prediction for snap_scaffold_23-snap.1154-T1
Valid prediction for snap_scaffold_23-snap.1173-T1
Valid prediction for Augustus_model.g34228.t1
Valid prediction for snap_scaffold_23-snap.1151-T1
Valid prediction for snap_scaffold_23-snap.1149-T1
Valid prediction for GlimmerHMM_glimmerT_51159-T1
Valid prediction for snap_scaffold_23-snap.1172-T1
Valid prediction for snap_scaffold_23-snap.1155-T1
Valid prediction for GlimmerHMM_glimmerT_51167-T1
Valid prediction for snap_scaffold_23-snap.1166-T1
Valid prediction for snap_scaffold_23-snap.1163-T1
Valid prediction for Augustus_model.g34227.t1
Valid prediction for snap_scaffold_23-snap.1162-T1
Valid prediction for snap_scaffold_23-snap.1156-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g34224.t1
Valid prediction for Augustus_model.g34226.t1
Valid prediction for GlimmerHMM_glimmerT_51163-T1
Valid prediction for GlimmerHMM_glimmerT_51156-T1
Valid prediction for GlimmerHMM_glimmerT_51165-T1
Valid prediction for GlimmerHMM_glimmerT_51151-T1
Valid prediction for snap_scaffold_23-snap.1165-T1
Valid prediction for GlimmerHMM_glimmerT_51155-T1
Valid prediction for GlimmerHMM_glimmerT_51161-T1
Valid prediction for snap_scaffold_23-snap.1164-T1
Valid prediction for snap_scaffold_23-snap.1168-T1
Valid prediction for GlimmerHMM_glimmerT_51153-T1
Valid prediction for snap_scaffold_23-snap.1153-T1
Valid prediction for GlimmerHMM_glimmerT_51152-T1
Valid prediction for GlimmerHMM_glimmerT_51169-T1
Valid prediction for Augustus_model.g34223.t1
Valid prediction for GlimmerHMM_glimmerT_51157-T1
Valid prediction for GlimmerHMM_glimmerT_51160-T1
Valid prediction for snap_scaffold_23-snap.1148-T1
Valid prediction for GlimmerHMM_glimmerT_51158-T1
Valid prediction for snap_scaffold_23-snap.1147-T1
Valid prediction for GlimmerHMM_glimmerT_51164-T1
Valid prediction for snap_scaffold_23-snap.1174-T1
Valid prediction for Augustus_model.g34222.t1
Valid prediction for GlimmerHMM_glimmerT_51150-T1
Valid prediction for GlimmerHMM_glimmerT_51162-T1
Valid prediction for snap_scaffold_23-snap.1161-T1
Valid prediction for snap_scaffold_23-snap.1167-T1
Valid prediction for snap_scaffold_23-snap.1160-T1
Valid prediction for snap_scaffold_23-snap.1152-T1
Valid prediction for snap_scaffold_23-snap.1170-T1
Couldn't classify 158853, 159019
Couldn't classify 159244, 159421
Sorry, prediction pasa_asmbl_30979.p1 fails validation.
(TAT)	 CC	158853-159019	GT	ACG
(AGC)	 AG	159244-159421	GA	AGG

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 108698, rend_intergenic: 98829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112285, rend_intergenic: 108848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122787, rend_intergenic: 120604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137443, rend_intergenic: 128155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154456, rend_intergenic: 140194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 161388
-exon list size: 205


building trellis

0.5    
1.0    
1.4    
1.9    
2.4    
2.9    
3.4    
3.9    
4.3    
4.8    
5.3    
5.8    
6.3    
6.8    
7.2    
7.7    
8.2    
8.7    
9.2    
9.7    
10.1    
10.6    
11.1    
11.6    
12.1    
12.6    
13.0    
13.5    
14.0    
14.5    
15.0    
15.5    
15.9    
16.4    
16.9    
17.4    
17.9    
18.4    
18.8    
19.3    
19.8    
20.3    
20.8    
21.3    
21.7    
22.2    
22.7    
23.2    
23.7    
24.2    
24.6    
25.1    
25.6    
26.1    
26.6    
27.1    
27.5    
28.0    
28.5    
29.0    
29.5    
30.0    
30.4    
30.9    
31.4    
31.9    
32.4    
32.9    
33.3    
33.8    
34.3    
34.8    
35.3    
35.7    
36.2    
36.7    
37.2    
37.7    
38.2    
38.6    
39.1    
39.6    
40.1    
40.6    
41.1    
41.5    
42.0    
42.5    
43.0    
43.5    
44.0    
44.4    
44.9    
45.4    
45.9    
46.4    
46.9    
47.3    
47.8    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.7    
53.1    
53.6    
54.1    
54.6    
55.1    
55.6    
56.0    
56.5    
57.0    
57.5    
58.0    
58.5    
58.9    
59.4    
59.9    
60.4    
60.9    
61.4    
61.8    
62.3    
62.8    
63.3    
63.8    
64.3    
64.7    
65.2    
65.7    
66.2    
66.7    
67.1    
67.6    
68.1    
68.6    
69.1    
69.6    
70.0    
70.5    
71.0    
71.5    
72.0    
72.5    
72.9    
73.4    
73.9    
74.4    
74.9    
75.4    
75.8    
76.3    
76.8    
77.3    
77.8    
78.3    
78.7    
79.2    
79.7    
80.2    
80.7    
81.2    
81.6    
82.1    
82.6    
83.1    
83.6    
84.1    
84.5    
85.0    
85.5    
86.0    
86.5    
87.0    
87.4    
87.9    
88.4    
88.9    
89.4    
89.9    
90.3    
90.8    
91.3    
91.8    
92.3    
92.8    
93.2    
93.7    
94.2    
94.7    
95.2    
95.7    
96.1    
96.6    
97.1    
97.6    
98.1    
98.6    
99.0    
99.5    
-found 20 predictions from path traversal
Error with prediction: snap lend_intergenic: 108698, rend_intergenic: 98829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112285, rend_intergenic: 108848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122787, rend_intergenic: 120604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137443, rend_intergenic: 128155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154456, rend_intergenic: 140194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support