-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_23/scaffold_23_3251027-3389044

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_50806-T1
Valid prediction for snap_scaffold_23-snap.669-T1
Valid prediction for snap_scaffold_23-snap.647-T1
Valid prediction for snap_scaffold_23-snap.653-T1
Valid prediction for GlimmerHMM_glimmerT_50800-T1
Valid prediction for snap_scaffold_23-snap.664-T1
Valid prediction for snap_scaffold_23-snap.657-T1
Valid prediction for snap_scaffold_23-snap.648-T1
Valid prediction for snap_scaffold_23-snap.661-T1
Valid prediction for snap_scaffold_23-snap.650-T1
Valid prediction for snap_scaffold_23-snap.655-T1
Valid prediction for snap_scaffold_23-snap.649-T1
Valid prediction for snap_scaffold_23-snap.667-T1
Valid prediction for GlimmerHMM_glimmerT_50794-T1
Valid prediction for Augustus_model.g33940.t1
Valid prediction for snap_scaffold_23-snap.659-T1
Valid prediction for Augustus_model.g33937.t1
Valid prediction for GlimmerHMM_glimmerT_50808-T1
Valid prediction for Augustus_model.g33945.t1
Valid prediction for GlimmerHMM_glimmerT_50796-T1
Valid prediction for GlimmerHMM_glimmerT_50793-T1
Valid prediction for snap_scaffold_23-snap.641-T1
Valid prediction for GlimmerHMM_glimmerT_50803-T1
Valid prediction for Augustus_model.g33931.t1
Valid prediction for Augustus_model.g33947.t1
Valid prediction for GlimmerHMM_glimmerT_50786-T1
Valid prediction for snap_scaffold_23-snap.662-T1
Valid prediction for GlimmerHMM_glimmerT_50790-T1
Valid prediction for GlimmerHMM_glimmerT_50791-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_23-snap.651-T1
Valid prediction for GlimmerHMM_glimmerT_50807-T1
Valid prediction for Augustus_model.g33943.t1
Valid prediction for Augustus_model.g33949.t1
Valid prediction for GlimmerHMM_glimmerT_50792-T1
Valid prediction for GlimmerHMM_glimmerT_50802-T1
Valid prediction for snap_scaffold_23-snap.658-T1
Valid prediction for Augustus_model.g33942.t1
Valid prediction for GlimmerHMM_glimmerT_50787-T1
Valid prediction for Augustus_model.g33934.t1
Valid prediction for Augustus_model.g33936.t1
Valid prediction for snap_scaffold_23-snap.643-T1
Valid prediction for snap_scaffold_23-snap.644-T1
Valid prediction for GlimmerHMM_glimmerT_50795-T1
Valid prediction for Augustus_model.g33932.t1
Valid prediction for snap_scaffold_23-snap.670-T1
Valid prediction for snap_scaffold_23-snap.660-T1
Valid prediction for snap_scaffold_23-snap.656-T1
Valid prediction for snap_scaffold_23-snap.665-T1
Valid prediction for GlimmerHMM_glimmerT_50801-T1
Valid prediction for snap_scaffold_23-snap.654-T1
Valid prediction for snap_scaffold_23-snap.668-T1
Valid prediction for Augustus_model.g33939.t1
Valid prediction for snap_scaffold_23-snap.663-T1
Valid prediction for Augustus_model.g33948.t1
Valid prediction for snap_scaffold_23-snap.666-T1
Valid prediction for Augustus_model.g33941.t1
Valid prediction for Augustus_model.g33946.t1
Valid prediction for GlimmerHMM_glimmerT_50798-T1
Valid prediction for snap_scaffold_23-snap.652-T1
Valid prediction for Augustus_model.g33944.t1
Valid prediction for GlimmerHMM_glimmerT_50805-T1
Valid prediction for snap_scaffold_23-snap.646-T1
Valid prediction for Augustus_model.g33938.t1
Valid prediction for GlimmerHMM_glimmerT_50804-T1
Valid prediction for GlimmerHMM_glimmerT_50799-T1
Valid prediction for GlimmerHMM_glimmerT_50809-T1
Valid prediction for Augustus_model.g33935.t1
Valid prediction for GlimmerHMM_glimmerT_50797-T1
Valid prediction for snap_scaffold_23-snap.640-T1
Valid prediction for snap_scaffold_23-snap.645-T1
Valid prediction for GlimmerHMM_glimmerT_50789-T1
Valid prediction for snap_scaffold_23-snap.642-T1
Valid prediction for Augustus_model.g33933.t1
Valid prediction for GlimmerHMM_glimmerT_50788-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 56627, rend_intergenic: 49327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61904, rend_intergenic: 60290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66440, rend_intergenic: 65119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68325, rend_intergenic: 66546  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76789, rend_intergenic: 71052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82077, rend_intergenic: 80370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92694, rend_intergenic: 86159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100749, rend_intergenic: 94651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105804, rend_intergenic: 101179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110054, rend_intergenic: 109709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112403, rend_intergenic: 110432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120609, rend_intergenic: 112604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 138018
-exon list size: 245


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.7    
10.1    
10.5    
10.9    
11.3    
11.7    
12.1    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.6    
17.0    
17.4    
17.8    
18.2    
18.6    
19.0    
19.4    
19.8    
20.2    
20.6    
21.1    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.9    
24.3    
24.7    
25.1    
25.5    
25.9    
26.3    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.1    
29.6    
30.0    
30.4    
30.8    
31.2    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.6    
36.0    
36.4    
36.8    
37.2    
37.7    
38.1    
38.5    
38.9    
39.3    
39.7    
40.1    
40.5    
40.9    
41.3    
41.7    
42.1    
42.5    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.2    
46.6    
47.0    
47.4    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.6    
53.0    
53.4    
53.8    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.5    
57.9    
58.3    
58.7    
59.1    
59.5    
59.9    
60.3    
60.7    
61.1    
61.5    
61.9    
62.3    
62.8    
63.2    
63.6    
64.0    
64.4    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.8    
69.2    
69.6    
70.0    
70.4    
70.9    
71.3    
71.7    
72.1    
72.5    
72.9    
73.3    
73.7    
74.1    
74.5    
74.9    
75.3    
75.7    
76.1    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.9    
79.4    
79.8    
80.2    
80.6    
81.0    
81.4    
81.8    
82.2    
82.6    
83.0    
83.4    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.9    
88.3    
88.7    
89.1    
89.5    
89.9    
90.3    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 56627, rend_intergenic: 49327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61904, rend_intergenic: 60290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66440, rend_intergenic: 65119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68325, rend_intergenic: 66546  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76789, rend_intergenic: 71052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82077, rend_intergenic: 80370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92694, rend_intergenic: 86159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100749, rend_intergenic: 94651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105804, rend_intergenic: 101179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110054, rend_intergenic: 109709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112403, rend_intergenic: 110432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120609, rend_intergenic: 112604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support