-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_23/scaffold_23_2787580-2937201

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_50711-T1
Valid prediction for snap_scaffold_23-snap.559-T1
Valid prediction for GlimmerHMM_glimmerT_50719-T1
Valid prediction for snap_scaffold_23-snap.536-T1
Valid prediction for snap_scaffold_23-snap.540-T1
Valid prediction for snap_scaffold_23-snap.549-T1
Valid prediction for snap_scaffold_23-snap.548-T1
Valid prediction for GlimmerHMM_glimmerT_50708-T1
Valid prediction for Augustus_model.g33889.t1
Valid prediction for snap_scaffold_23-snap.539-T1
Valid prediction for snap_scaffold_23-snap.537-T1
Valid prediction for snap_scaffold_23-snap.556-T1
Valid prediction for snap_scaffold_23-snap.544-T1
Valid prediction for GlimmerHMM_glimmerT_50723-T1
Valid prediction for GlimmerHMM_glimmerT_50713-T1
Valid prediction for Augustus_model.g33879.t1
Valid prediction for Augustus_model.g33882.t1
Valid prediction for GlimmerHMM_glimmerT_50718-T1
Valid prediction for GlimmerHMM_glimmerT_50721-T1
Valid prediction for snap_scaffold_23-snap.553-T1
Valid prediction for snap_scaffold_23-snap.545-T1
Valid prediction for snap_scaffold_23-snap.542-T1
Valid prediction for snap_scaffold_23-snap.555-T1
Valid prediction for GlimmerHMM_glimmerT_50710-T1
Valid prediction for snap_scaffold_23-snap.554-T1
Valid prediction for snap_scaffold_23-snap.527-T1
Valid prediction for snap_scaffold_23-snap.543-T1
Valid prediction for Augustus_model.g33885.t1
Valid prediction for snap_scaffold_23-snap.552-T1
Valid prediction for snap_scaffold_23-snap.541-T1
Valid prediction for snap_scaffold_23-snap.560-T1
Valid prediction for snap_scaffold_23-snap.532-T1
Valid prediction for snap_scaffold_23-snap.547-T1
Valid prediction for Augustus_model.g33890.t1
Valid prediction for snap_scaffold_23-snap.531-T1
Valid prediction for snap_scaffold_23-snap.551-T1
Valid prediction for Augustus_model.g33888.t1
Valid prediction for GlimmerHMM_glimmerT_50716-T1
Valid prediction for Augustus_model.g33886.t1
Valid prediction for GlimmerHMM_glimmerT_50714-T1
Valid prediction for GlimmerHMM_glimmerT_50702-T1
Valid prediction for Augustus_model.g33893.t1
Valid prediction for Augustus_model.g33878.t1
Valid prediction for Augustus_model.g33883.t1
Valid prediction for GlimmerHMM_glimmerT_50707-T1
Valid prediction for snap_scaffold_23-snap.558-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_23-snap.533-T1
Valid prediction for GlimmerHMM_glimmerT_50720-T1
Valid prediction for Augustus_model.g33884.t1
Valid prediction for Augustus_model.g33880.t1
Valid prediction for GlimmerHMM_glimmerT_50706-T1
Valid prediction for GlimmerHMM_glimmerT_50722-T1
Valid prediction for Augustus_model.g33881.t1
Valid prediction for Augustus_model.g33877.t1
Valid prediction for GlimmerHMM_glimmerT_50703-T1
Valid prediction for Augustus_model.g33892.t1
Valid prediction for Augustus_model.g33876.t1
Valid prediction for GlimmerHMM_glimmerT_50705-T1
Valid prediction for snap_scaffold_23-snap.534-T1
Valid prediction for GlimmerHMM_glimmerT_50704-T1
Valid prediction for GlimmerHMM_glimmerT_50712-T1
Valid prediction for snap_scaffold_23-snap.535-T1
Valid prediction for Augustus_model.g33887.t1
Valid prediction for snap_scaffold_23-snap.546-T1
Valid prediction for snap_scaffold_23-snap.538-T1
Valid prediction for snap_scaffold_23-snap.561-T1
Valid prediction for GlimmerHMM_glimmerT_50715-T1
Valid prediction for snap_scaffold_23-snap.550-T1
Valid prediction for snap_scaffold_23-snap.528-T1
Valid prediction for snap_scaffold_23-snap.530-T1
Valid prediction for GlimmerHMM_glimmerT_50699-T1
Valid prediction for Augustus_model.g33891.t1
Valid prediction for snap_scaffold_23-snap.529-T1
Valid prediction for GlimmerHMM_glimmerT_50709-T1
Valid prediction for snap_scaffold_23-snap.557-T1
Valid prediction for GlimmerHMM_glimmerT_50701-T1
Valid prediction for GlimmerHMM_glimmerT_50717-T1
Valid prediction for GlimmerHMM_glimmerT_50700-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 111156, rend_intergenic: 110511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147548, rend_intergenic: 143775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 149622
-exon list size: 246


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.4    
4.8    
5.2    
5.6    
6.0    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.7    
10.1    
10.5    
10.9    
11.3    
11.7    
12.1    
12.5    
12.9    
13.3    
13.7    
14.1    
14.5    
14.9    
15.3    
15.7    
16.1    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
19.0    
19.4    
19.8    
20.2    
20.6    
21.0    
21.4    
21.8    
22.2    
22.6    
23.0    
23.4    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.6    
27.0    
27.4    
27.8    
28.2    
28.6    
29.0    
29.4    
29.8    
30.2    
30.6    
31.0    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.9    
38.3    
38.7    
39.1    
39.5    
39.9    
40.3    
40.7    
41.1    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
44.0    
44.4    
44.8    
45.2    
45.6    
46.0    
46.4    
46.8    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.2    
53.6    
54.0    
54.4    
54.8    
55.2    
55.6    
56.0    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.7    
60.1    
60.5    
60.9    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
69.0    
69.4    
69.8    
70.2    
70.6    
71.0    
71.4    
71.8    
72.2    
72.6    
73.0    
73.4    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.6    
77.0    
77.4    
77.8    
78.2    
78.6    
79.0    
79.4    
79.8    
80.2    
80.6    
81.0    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.9    
84.3    
84.7    
85.1    
85.5    
85.9    
86.3    
86.7    
87.1    
87.5    
87.9    
88.3    
88.7    
89.1    
89.5    
89.9    
90.3    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
94.0    
94.4    
94.8    
95.2    
95.6    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 111156, rend_intergenic: 110511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147548, rend_intergenic: 143775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support