-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_23/scaffold_23_10682960-10998502

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_51773-T1
Valid prediction for snap_scaffold_23-snap.2069-T1
Sorry, intron length (6) is less than minimum required (10)
Sorry, intron length (9) is less than minimum required (10)
Sorry, intron length (9) is less than minimum required (10)
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_51775-T1
Valid prediction for snap_scaffold_23-snap.2118-T1
Valid prediction for GlimmerHMM_glimmerT_51783-T1
Valid prediction for GlimmerHMM_glimmerT_51796-T1
Couldn't classify 139956, 140285
Sorry, prediction pasa_asmbl_31162.p1 fails validation.
(ATG)	 AG	139956-140285	GG	GGG
Valid prediction for snap_scaffold_23-snap.2090-T1
Valid prediction for GlimmerHMM_glimmerT_51761-T1
Valid prediction for GlimmerHMM_glimmerT_51801-T1
Valid prediction for snap_scaffold_23-snap.2103-T1
Valid prediction for snap_scaffold_23-snap.2114-T1
Valid prediction for snap_scaffold_23-snap.2080-T1
Valid prediction for GlimmerHMM_glimmerT_51760-T1
Valid prediction for GlimmerHMM_glimmerT_51798-T1
Couldn't classify 9045, 9192
Sorry, prediction pasa_asmbl_31867.p1 fails validation.
(CCC)	 GT	9045-9192	GT	CAG
(CGG)	 AG	11770-11957	TG	GAT
-recovered pasa_asmbl_31867.p1, terminal, 11770, 11957
Valid prediction for GlimmerHMM_glimmerT_51793-T1
Valid prediction for GlimmerHMM_glimmerT_51764-T1
Valid prediction for pasa_asmbl_31971.p1
Valid prediction for snap_scaffold_23-snap.2085-T1
Valid prediction for CodingQuarry_transcript_35806-T1
Valid prediction for CodingQuarry_transcript_35807-T1
Valid prediction for GlimmerHMM_glimmerT_51790-T1
Valid prediction for snap_scaffold_23-snap.2078-T1
Valid prediction for snap_scaffold_23-snap.2094-T1
Couldn't classify 177611, 177745
Couldn't classify 178733, 178836
Sorry, prediction pasa_asmbl_31880.p1 fails validation.
(CAC)	 CA	177611-177745	GT	TGG
(GTA)	 AG	177869-177983	GT	AGG
(AGT)	 AG	178733-178836	AA	CCA
-recovered pasa_asmbl_31880.p1, internal, 177869, 177983
Valid prediction for snap_scaffold_23-snap.2108-T1
Couldn't classify 175481, 175550
Sorry, prediction pasa_asmbl_31879.p1 fails validation.
(ATG)	 TG	172840-172869	GT	ACG
(GGA)	 AG	174064-174096	GT	AGG
(GAG)	 AG	174708-174829	GT	AGG
(CTA)	 AG	175109-175204	GT	GAG
(TCG)	 AG	175481-175550	GC	ATG
-recovered pasa_asmbl_31879.p1, initial, 172840, 172869
-recovered pasa_asmbl_31879.p1, internal, 174064, 174096
-recovered pasa_asmbl_31879.p1, internal, 174708, 174829
-recovered pasa_asmbl_31879.p1, internal, 175109, 175204
-recovered pasa_asmbl_31879.p1, internal, 175481, 175550
Valid prediction for snap_scaffold_23-snap.2130-T1
Valid prediction for snap_scaffold_23-snap.2097-T1
Valid prediction for snap_scaffold_23-snap.2121-T1
Valid prediction for snap_scaffold_23-snap.2068-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_35811-T1
Valid prediction for snap_scaffold_23-snap.2100-T1
Valid prediction for snap_scaffold_23-snap.2079-T1
Valid prediction for GlimmerHMM_glimmerT_51784-T1
Couldn't classify 21166, 21252
Couldn't classify 22355, 22386
Sorry, prediction CodingQuarry_transcript_35801-T1 fails validation.
(ATG)	 GC	21028-21066	GT	CCG
(GTG)	 AG	21166-21252	GG	ACG
(GGC)	 CA	22355-22386	GT	ACG
(AGG)	 AG	22540-22717	TG	AGT
-recovered CodingQuarry_transcript_35801-T1, initial, 21028, 21066
-recovered CodingQuarry_transcript_35801-T1, terminal, 22540, 22717
Valid prediction for snap_scaffold_23-snap.2088-T1
Valid prediction for pasa_asmbl_31884.p1
Valid prediction for GlimmerHMM_glimmerT_51804-T1
Valid prediction for CodingQuarry_transcript_35818-T1
Couldn't classify 217739, 217758
Couldn't classify 219576, 219618
Sorry, prediction pasa_asmbl_31893.p1 fails validation.
(CCC)	 AT	217739-217758	GT	AAG
(AAG)	 AG	218139-218280	GT	ATG
(GGG)	 AG	218569-218705	GT	AGG
(ATT)	 AG	219576-219618	AC	GAA
add_exon() Sorry, pasa_asmbl_31893.p1 218569-218705-terminal-2 is invalid.
-recovered pasa_asmbl_31893.p1, terminal, 218569, 218705
-recovered pasa_asmbl_31893.p1, internal, 218139, 218280
-recovered pasa_asmbl_31893.p1, internal, 218569, 218705
Valid prediction for GlimmerHMM_glimmerT_51777-T1
Valid prediction for snap_scaffold_23-snap.2129-T1
Valid prediction for CodingQuarry_transcript_35812-T1
Valid prediction for snap_scaffold_23-snap.2111-T1
Couldn't classify 214294, 214446
Sorry, prediction pasa_asmbl_31891.p1 fails validation.
(AGC)	 GC	214294-214446	GT	AGG
(CTC)	 AG	214648-214824	GT	AGG
(CCG)	 AG	214910-215107	GA	GAG
-recovered pasa_asmbl_31891.p1, terminal, 214910, 215107
-recovered pasa_asmbl_31891.p1, internal, 214648, 214824
Valid prediction for snap_scaffold_23-snap.2064-T1
Couldn't classify 27200, 27739
Sorry, prediction pasa_asmbl_31148.p1 fails validation.
(GGA)	 GA	27200-27739	GC	AGG
Valid prediction for snap_scaffold_23-snap.2075-T1
Valid prediction for GlimmerHMM_glimmerT_51770-T1
Couldn't classify 186155, 186294
Sorry, prediction pasa_asmbl_31961.p1 fails validation.
(AGG)	 GC	186155-186294	GT	TGG
(TTT)	 AG	186741-186868	GT	CGG
(AGA)	 AG	186949-187115	GT	AGG
(CTG)	 AG	187198-187388	GT	AGG
(TGA)	 AG	188520-188651	GT	AGG
(GCG)	 AG	188830-188869	AG	AAA
-recovered pasa_asmbl_31961.p1, terminal, 188830, 188869
-recovered pasa_asmbl_31961.p1, internal, 186741, 186868
-recovered pasa_asmbl_31961.p1, internal, 186949, 187115
-recovered pasa_asmbl_31961.p1, internal, 187198, 187388
-recovered pasa_asmbl_31961.p1, internal, 188520, 188651
Valid prediction for snap_scaffold_23-snap.2124-T1
Valid prediction for CodingQuarry_transcript_35808-T1
Valid prediction for snap_scaffold_23-snap.2063-T1
Valid prediction for snap_scaffold_23-snap.2128-T1
Valid prediction for GlimmerHMM_glimmerT_51763-T1
Valid prediction for GlimmerHMM_glimmerT_51791-T1
Valid prediction for snap_scaffold_23-snap.2087-T1
Valid prediction for GlimmerHMM_glimmerT_51794-T1
Couldn't classify 208121, 208312
Sorry, prediction pasa_asmbl_31887.p1 fails validation.
(GTT)	 GA	208121-208312	GT	ATG
(AGA)	 AG	208534-208709	GT	AGG
(GAT)	 AG	209681-209753	AG	AGA
-recovered pasa_asmbl_31887.p1, terminal, 208534, 208709
-recovered pasa_asmbl_31887.p1, terminal, 209681, 209753
-recovered pasa_asmbl_31887.p1, internal, 208534, 208709
Valid prediction for GlimmerHMM_glimmerT_51772-T1
Valid prediction for GlimmerHMM_glimmerT_51766-T1
Valid prediction for snap_scaffold_23-snap.2110-T1
Valid prediction for CodingQuarry_transcript_35813-T1
Valid prediction for GlimmerHMM_glimmerT_51762-T1
Valid prediction for GlimmerHMM_glimmerT_51788-T1
Valid prediction for snap_scaffold_23-snap.2066-T1
Valid prediction for GlimmerHMM_glimmerT_51780-T1
Valid prediction for snap_scaffold_23-snap.2125-T1
Valid prediction for GlimmerHMM_glimmerT_51797-T1
Valid prediction for GlimmerHMM_glimmerT_51789-T1
Valid prediction for snap_scaffold_23-snap.2096-T1
Valid prediction for snap_scaffold_23-snap.2081-T1
Valid prediction for GlimmerHMM_glimmerT_51807-T1
Valid prediction for pasa_asmbl_31898.p1
Valid prediction for GlimmerHMM_glimmerT_51806-T1
Valid prediction for snap_scaffold_23-snap.2115-T1
Valid prediction for snap_scaffold_23-snap.2112-T1
Couldn't classify 147627, 147658
Sorry, prediction pasa_asmbl_31874.p1 fails validation.
(GAT)	 AG	147627-147658	GT	AGG
(GAT)	 AG	148936-149009	GT	CGG
(GAA)	 AG	149125-149165	GT	AGG
(ATC)	 AG	149414-149475	GT	AGG
(GGA)	 AG	149962-150061	GT	ACG
(CCC)	 AG	150874-150956	GT	CGG
(ACG)	 AG	151611-151770	GT	ATG
(GTG)	 AG	152030-152240	GT	AGG
(AAC)	 AG	152607-152770	GT	TGG
(CAA)	 AG	153194-153354	GT	ACG
(ATT)	 AG	153634-153691	GT	AGG
(GAC)	 AG	153780-153845	CA	AGC
-recovered pasa_asmbl_31874.p1, terminal, 153780, 153845
-recovered pasa_asmbl_31874.p1, internal, 147627, 147658
-recovered pasa_asmbl_31874.p1, internal, 148936, 149009
-recovered pasa_asmbl_31874.p1, internal, 149125, 149165
-recovered pasa_asmbl_31874.p1, internal, 149414, 149475
-recovered pasa_asmbl_31874.p1, internal, 149962, 150061
-recovered pasa_asmbl_31874.p1, internal, 150874, 150956
-recovered pasa_asmbl_31874.p1, internal, 151611, 151770
-recovered pasa_asmbl_31874.p1, internal, 152030, 152240
-recovered pasa_asmbl_31874.p1, internal, 152607, 152770
-recovered pasa_asmbl_31874.p1, internal, 153194, 153354
-recovered pasa_asmbl_31874.p1, internal, 153634, 153691
Valid prediction for snap_scaffold_23-snap.2106-T1
Valid prediction for snap_scaffold_23-snap.2072-T1
Valid prediction for snap_scaffold_23-snap.2083-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_51776-T1
Valid prediction for snap_scaffold_23-snap.2120-T1
Valid prediction for snap_scaffold_23-snap.2132-T1
Valid prediction for snap_scaffold_23-snap.2126-T1
Valid prediction for GlimmerHMM_glimmerT_51805-T1
Valid prediction for snap_scaffold_23-snap.2062-T1
Valid prediction for snap_scaffold_23-snap.2093-T1
Valid prediction for snap_scaffold_23-snap.2099-T1
Valid prediction for snap_scaffold_23-snap.2091-T1
Valid prediction for GlimmerHMM_glimmerT_51803-T1
Valid prediction for snap_scaffold_23-snap.2077-T1
Valid prediction for snap_scaffold_23-snap.2107-T1
Sorry, intron length (9) is less than minimum required (10)
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_51802-T1
Valid prediction for GlimmerHMM_glimmerT_51771-T1
Couldn't classify 77932, 78033
Sorry, prediction pasa_asmbl_31173.p1 fails validation.
(ATG)	 AG	75299-75361	GT	AGG
(TTC)	 AG	76075-76216	GT	GAG
(GTG)	 AG	77145-77273	GT	TGG
(GCA)	 AG	77471-77604	GT	CAG
(AAA)	 AG	77932-78033	CC	TTC
-recovered pasa_asmbl_31173.p1, initial, 75299, 75361
-recovered pasa_asmbl_31173.p1, internal, 75299, 75361
-recovered pasa_asmbl_31173.p1, internal, 76075, 76216
-recovered pasa_asmbl_31173.p1, internal, 77145, 77273
-recovered pasa_asmbl_31173.p1, internal, 77471, 77604
Valid prediction for GlimmerHMM_glimmerT_51787-T1
Valid prediction for GlimmerHMM_glimmerT_51785-T1
Valid prediction for CodingQuarry_transcript_35805-T1
Valid prediction for GlimmerHMM_glimmerT_51779-T1
Valid prediction for snap_scaffold_23-snap.2065-T1
Couldn't classify 188771, 188815
Sorry, prediction pasa_asmbl_31266.p1 fails validation.
(ATG)	 AC	185160-185207	GT	AGG
(TTC)	 AG	187485-187671	GT	GGG
(GGG)	 AG	188580-188656	GT	AGG
(ACT)	 AG	188771-188815	TA	GGT
-recovered pasa_asmbl_31266.p1, initial, 185160, 185207
-recovered pasa_asmbl_31266.p1, internal, 187485, 187671
-recovered pasa_asmbl_31266.p1, internal, 188580, 188656
Couldn't classify 280920, 281156
Couldn't classify 282602, 282721
Sorry, prediction pasa_asmbl_31151.p1 fails validation.
(AAG)	 CC	280920-281156	GT	AGG
(CTC)	 AG	282602-282721	AC	CCA
Valid prediction for snap_scaffold_23-snap.2098-T1
Couldn't classify 173984, 174025
Couldn't classify 174786, 175088
Sorry, prediction pasa_asmbl_31238.p1 fails validation.
(GAG)	 AG	173984-174025	GT	AGG
(GTG)	 AG	174137-174209	GT	CGG
(GCT)	 AG	174575-174696	GT	AGG
(ACA)	 AG	174786-175088	AC	ACA
-recovered pasa_asmbl_31238.p1, internal, 173984, 174025
-recovered pasa_asmbl_31238.p1, internal, 174137, 174209
-recovered pasa_asmbl_31238.p1, internal, 174575, 174696
Valid prediction for GlimmerHMM_glimmerT_51765-T1
Couldn't classify 56459, 56501
Sorry, prediction pasa_asmbl_31175.p1 fails validation.
(GCA)	 CT	56459-56501	GT	TGG
(GCC)	 AG	57635-57739	GT	AGG
(GTT)	 AG	57915-58107	GT	AGG
(GAG)	 AG	58180-58301	GT	AGG
(ACA)	 AG	58438-58507	GT	AGG
(GGT)	 AG	58611-58656	CA	AAC
-recovered pasa_asmbl_31175.p1, terminal, 58611, 58656
-recovered pasa_asmbl_31175.p1, internal, 57635, 57739
-recovered pasa_asmbl_31175.p1, internal, 57915, 58107
-recovered pasa_asmbl_31175.p1, internal, 58180, 58301
-recovered pasa_asmbl_31175.p1, internal, 58438, 58507
Valid prediction for GlimmerHMM_glimmerT_51782-T1
Valid prediction for CodingQuarry_transcript_35817-T1
Valid prediction for GlimmerHMM_glimmerT_51808-T1
Couldn't classify 7583, 7624
Sorry, prediction pasa_asmbl_31186.p3 fails validation.
(ACA)	 AG	7583-7624	GT	TGG
(TGT)	 AG	8293-8412	GT	AGG
(GAG)	 AG	9637-9752	GT	AGG
(GCC)	 AG	10166-10205	AC	GAA
-recovered pasa_asmbl_31186.p3, terminal, 10166, 10205
-recovered pasa_asmbl_31186.p3, internal, 7583, 7624
-recovered pasa_asmbl_31186.p3, internal, 8293, 8412
-recovered pasa_asmbl_31186.p3, internal, 9637, 9752
Valid prediction for CodingQuarry_transcript_35804-T1
Valid prediction for snap_scaffold_23-snap.2071-T1
Valid prediction for GlimmerHMM_glimmerT_51786-T1
Valid prediction for CodingQuarry_transcript_35819-T1
Couldn't classify 231581, 231689
Couldn't classify 236123, 236224
Sorry, prediction pasa_asmbl_31156.p1 fails validation.
(CAG)	 CC	231581-231689	GT	AGG
(TAG)	 AG	234238-234271	GT	AGG
(GGC)	 AG	234471-234520	GT	CAG
(TCA)	 AG	234669-234740	GT	AGG
(ACA)	 AG	234885-234942	GT	GAG
(GCA)	 AG	235073-235235	GT	AGG
(GAG)	 AG	235568-235666	GT	AGG
(CAA)	 AG	235930-236034	GT	ATG
(GTG)	 AG	236123-236224	GG	CAG
-recovered pasa_asmbl_31156.p1, internal, 234238, 234271
-recovered pasa_asmbl_31156.p1, internal, 234471, 234520
-recovered pasa_asmbl_31156.p1, internal, 234669, 234740
-recovered pasa_asmbl_31156.p1, internal, 234885, 234942
-recovered pasa_asmbl_31156.p1, internal, 235073, 235235
-recovered pasa_asmbl_31156.p1, internal, 235568, 235666
-recovered pasa_asmbl_31156.p1, internal, 235930, 236034
Couldn't classify 213295, 213400
Sorry, prediction pasa_asmbl_31271.p1 fails validation.
(ATC)	 CC	213295-213400	GT	CGG
(GGT)	 AG	213661-213817	GT	AGG
(CAT)	 AG	215380-215445	GT	AGG
(GCT)	 AG	215961-216009	GA	AAG
-recovered pasa_asmbl_31271.p1, terminal, 215961, 216009
-recovered pasa_asmbl_31271.p1, internal, 213661, 213817
-recovered pasa_asmbl_31271.p1, internal, 215380, 215445
Valid prediction for GlimmerHMM_glimmerT_51795-T1
Valid prediction for snap_scaffold_23-snap.2105-T1
Valid prediction for snap_scaffold_23-snap.2113-T1
Couldn't classify 14975, 15256
Sorry, prediction pasa_asmbl_31183.p1 fails validation.
(GTA)	 TG	14975-15256	GT	TGG
(TCC)	 AG	15436-15639	GT	CAG
(CAA)	 AG	15727-15782	GT	AGG
(AGG)	 AG	15888-16040	GT	AAG
(GGA)	 AG	16545-16745	GT	TGG
(GTA)	 AG	17054-17171	GT	TGG
(GAT)	 AG	17270-17401	AG	GAA
-recovered pasa_asmbl_31183.p1, terminal, 17270, 17401
-recovered pasa_asmbl_31183.p1, internal, 15436, 15639
-recovered pasa_asmbl_31183.p1, internal, 15727, 15782
-recovered pasa_asmbl_31183.p1, internal, 15888, 16040
-recovered pasa_asmbl_31183.p1, internal, 16545, 16745
-recovered pasa_asmbl_31183.p1, internal, 17054, 17171
Valid prediction for GlimmerHMM_glimmerT_51809-T1
Valid prediction for snap_scaffold_23-snap.2076-T1
Valid prediction for GlimmerHMM_glimmerT_51767-T1
Valid prediction for pasa_asmbl_31160.p1
Valid prediction for snap_scaffold_23-snap.2074-T1
Valid prediction for GlimmerHMM_glimmerT_51799-T1
Valid prediction for CodingQuarry_transcript_35815-T1
Couldn't classify 42263, 42281
Couldn't classify 42466, 42890
Sorry, prediction pasa_asmbl_31181.p1 fails validation.
(GAA)	 AA	42263-42281	GT	TGG
(CAG)	 AG	42466-42890	CT	GCC
Valid prediction for GlimmerHMM_glimmerT_51778-T1
Valid prediction for GlimmerHMM_glimmerT_51768-T1
Valid prediction for snap_scaffold_23-snap.2082-T1
Couldn't classify 284858, 284906
Couldn't classify 286163, 286269
Sorry, prediction pasa_asmbl_31150.p1 fails validation.
(CCA)	 CC	284858-284906	GT	GGG
(CGT)	 AG	285103-285255	GT	ATG
(GCT)	 AG	285552-285641	GT	CGG
(AGG)	 AG	286163-286269	GA	AGG
-recovered pasa_asmbl_31150.p1, internal, 285103, 285255
-recovered pasa_asmbl_31150.p1, internal, 285552, 285641
Valid prediction for snap_scaffold_23-snap.2073-T1
Sorry, intron length (4) is less than minimum required (10)
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for pasa_asmbl_31155.p1
Valid prediction for snap_scaffold_23-snap.2133-T1
Valid prediction for CodingQuarry_transcript_35802-T1
Valid prediction for GlimmerHMM_glimmerT_51759-T1
Valid prediction for GlimmerHMM_glimmerT_51792-T1
Valid prediction for snap_scaffold_23-snap.2102-T1
Valid prediction for snap_scaffold_23-snap.2123-T1
Valid prediction for pasa_asmbl_31152.p1
Valid prediction for snap_scaffold_23-snap.2101-T1
Valid prediction for GlimmerHMM_glimmerT_51781-T1
Valid prediction for snap_scaffold_23-snap.2131-T1
Valid prediction for snap_scaffold_23-snap.2086-T1
Valid prediction for snap_scaffold_23-snap.2122-T1
Couldn't classify 170758, 170887
Couldn't classify 173114, 173156
Sorry, prediction pasa_asmbl_31164.p1 fails validation.
(CAG)	 GG	170758-170887	GT	AGG
(ATG)	 AG	171201-171279	GT	GGG
(CTC)	 AG	171450-171544	GT	AGG
(ACT)	 AG	171774-171847	GT	AGG
(GTT)	 AG	172272-172442	GT	AGG
(AAC)	 AG	172843-173021	GT	GGG
(GGA)	 AG	173114-173156	AC	AGA
add_exon() Sorry, pasa_asmbl_31164.p1 171201-171279-initial-1 is invalid.
-recovered pasa_asmbl_31164.p1, initial, 171201, 171279
-recovered pasa_asmbl_31164.p1, internal, 171201, 171279
-recovered pasa_asmbl_31164.p1, internal, 171450, 171544
-recovered pasa_asmbl_31164.p1, internal, 171774, 171847
-recovered pasa_asmbl_31164.p1, internal, 172272, 172442
-recovered pasa_asmbl_31164.p1, internal, 172843, 173021
Valid prediction for snap_scaffold_23-snap.2127-T1
Valid prediction for snap_scaffold_23-snap.2117-T1
Valid prediction for snap_scaffold_23-snap.2119-T1
Valid prediction for GlimmerHMM_glimmerT_51800-T1
Valid prediction for GlimmerHMM_glimmerT_51774-T1
Valid prediction for CodingQuarry_transcript_35820-T1
Valid prediction for snap_scaffold_23-snap.2109-T1
Valid prediction for snap_scaffold_23-snap.2084-T1
Valid prediction for CodingQuarry_transcript_35803-T1
Valid prediction for GlimmerHMM_glimmerT_51769-T1
Valid prediction for snap_scaffold_23-snap.2116-T1
Couldn't classify 189437, 189745
Sorry, prediction pasa_asmbl_31159.p1 fails validation.
(CCA)	 TA	189437-189745	TG	AAT
Valid prediction for CodingQuarry_transcript_35814-T1
Valid prediction for CodingQuarry_transcript_35816-T1
Valid prediction for snap_scaffold_23-snap.2095-T1
Valid prediction for snap_scaffold_23-snap.2104-T1
Valid prediction for snap_scaffold_23-snap.2092-T1
Valid prediction for pasa_asmbl_31166.p1
Valid prediction for snap_scaffold_23-snap.2089-T1
Valid prediction for snap_scaffold_23-snap.2070-T1
Valid prediction for snap_scaffold_23-snap.2067-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11884, rend_intergenic: 3072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24286, rend_intergenic: 14803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31534, rend_intergenic: 27365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53037, rend_intergenic: 31978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56907, rend_intergenic: 54534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68499, rend_intergenic: 67242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86480, rend_intergenic: 71504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92676, rend_intergenic: 89896  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96046, rend_intergenic: 95817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102600, rend_intergenic: 96438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118202, rend_intergenic: 103026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122356, rend_intergenic: 120574  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128128, rend_intergenic: 126119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146622, rend_intergenic: 141771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153845, rend_intergenic: 153253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172722, rend_intergenic: 164109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182964, rend_intergenic: 174409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188869, rend_intergenic: 185288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191495, rend_intergenic: 189273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200079, rend_intergenic: 194647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239475, rend_intergenic: 229901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 248214, rend_intergenic: 243873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 261946, rend_intergenic: 257217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 269098, rend_intergenic: 263977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 315543
-exon list size: 690


building trellis

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-found 54 predictions from path traversal
Error with prediction: snap lend_intergenic: 11884, rend_intergenic: 3072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24286, rend_intergenic: 14803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31534, rend_intergenic: 27365  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53037, rend_intergenic: 31978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56907, rend_intergenic: 54534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68499, rend_intergenic: 67242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86480, rend_intergenic: 71504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92676, rend_intergenic: 89896  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96046, rend_intergenic: 95817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102600, rend_intergenic: 96438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118202, rend_intergenic: 103026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122356, rend_intergenic: 120574  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128128, rend_intergenic: 126119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146622, rend_intergenic: 141771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153845, rend_intergenic: 153253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172722, rend_intergenic: 164109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182964, rend_intergenic: 174409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188869, rend_intergenic: 185288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191495, rend_intergenic: 189273  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200079, rend_intergenic: 194647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239475, rend_intergenic: 229901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 248214, rend_intergenic: 243873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 261946, rend_intergenic: 257217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 269098, rend_intergenic: 263977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 41 predictions persist after filtering for low support