-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2292

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 169, 216
Sorry, prediction Augustus_model.g40838.t1 fails validation.
(AGT)	 AG	169-216	GT	AGG
(ATG)	 AG	544-634	GT	TGG
(TTC)	 AG	815-860	GT	AGG
(TCT)	 AG	1163-1193	TA	AAT
-recovered Augustus_model.g40838.t1, initial, 544, 634
-recovered Augustus_model.g40838.t1, terminal, 1163, 1193
-recovered Augustus_model.g40838.t1, internal, 169, 216
-recovered Augustus_model.g40838.t1, internal, 544, 634
-recovered Augustus_model.g40838.t1, internal, 815, 860

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2292-snap.1-T1
add_exon() Sorry, snap_scaffold_2292-snap.1-T1 234-454-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1405
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support