-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_229

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 258, 327
Sorry, prediction snap_scaffold_229-snap.1-T1 fails validation.
(TTG)	 AG	258-327	GT	AGG
(CCC)	 AG	2063-2173	GT	CAG
(CGC)	 AG	3378-3448	GT	TGG
(AAG)	 AG	3749-3824	GT	AGG
(CTC)	 AG	5338-5371	AC	GAA
-recovered snap_scaffold_229-snap.1-T1, terminal, 5338, 5371
-recovered snap_scaffold_229-snap.1-T1, internal, 258, 327
-recovered snap_scaffold_229-snap.1-T1, internal, 2063, 2173
-recovered snap_scaffold_229-snap.1-T1, internal, 3378, 3448
-recovered snap_scaffold_229-snap.1-T1, internal, 3749, 3824

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60041-T1
Couldn't classify 7180, 7288
Sorry, prediction snap_scaffold_229-snap.2-T1 fails validation.
(ATG)	 TC	3992-4572	GT	GAG
(ACA)	 AG	4604-4837	GT	GAG
(GGC)	 AG	5528-5616	GT	AGG
(GTG)	 AG	5860-5991	GT	CAG
(CTG)	 AG	6140-6270	GT	GGG
(GGG)	 AG	6418-6456	GT	GGG
(ATA)	 AG	6930-7038	GT	GGG
(GAC)	 AG	7180-7288	GT	CAG
-recovered snap_scaffold_229-snap.2-T1, initial, 3992, 4572
-recovered snap_scaffold_229-snap.2-T1, internal, 4604, 4837
-recovered snap_scaffold_229-snap.2-T1, internal, 5528, 5616
-recovered snap_scaffold_229-snap.2-T1, internal, 5860, 5991
-recovered snap_scaffold_229-snap.2-T1, internal, 6140, 6270
-recovered snap_scaffold_229-snap.2-T1, internal, 6418, 6456
-recovered snap_scaffold_229-snap.2-T1, internal, 6930, 7038
-recovered snap_scaffold_229-snap.2-T1, internal, 7180, 7288
Valid prediction for snap_scaffold_229-snap.3-T1
Valid prediction for Augustus_model.g39766.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5371, rend_intergenic: 2050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9337
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5371, rend_intergenic: 2050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support