-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2270

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 310, 587
Couldn't classify 677, 793
Sorry, prediction snap_scaffold_2270-snap.1-T1 fails validation.
(GGC)	 AG	310-587	GT	AGG
(GTA)	 AG	677-793	GT	AGG
-recovered snap_scaffold_2270-snap.1-T1, internal, 310, 587
-recovered snap_scaffold_2270-snap.1-T1, internal, 677, 793

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 549, 636
Sorry, prediction Augustus_model.g40835.t1 fails validation.
(GCA)	 AG	549-636	GT	AGG
(GGT)	 AG	936-1099	CC	GAC
-recovered Augustus_model.g40835.t1, terminal, 936, 1099
-recovered Augustus_model.g40835.t1, internal, 549, 636
Couldn't classify 549, 636
Sorry, prediction GlimmerHMM_glimmerT_61543-T1 fails validation.
(GCA)	 AG	549-636	GT	AGG
(GGT)	 AG	936-1099	CC	GAC
-recovered GlimmerHMM_glimmerT_61543-T1, terminal, 936, 1099
-recovered GlimmerHMM_glimmerT_61543-T1, internal, 549, 636

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1422
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support