-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_227

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6315, 6430
Couldn't classify 8457, 8644
Sorry, prediction snap_scaffold_227-snap.2-T1 fails validation.
(GCA)	 AG	6315-6430	GT	CGG
(ATC)	 AG	7601-7644	GT	TGG
(GCC)	 AG	7987-8236	GT	GGG
(AAC)	 AG	8457-8644	GT	TGG
-recovered snap_scaffold_227-snap.2-T1, internal, 6315, 6430
-recovered snap_scaffold_227-snap.2-T1, internal, 7601, 7644
-recovered snap_scaffold_227-snap.2-T1, internal, 7987, 8236
-recovered snap_scaffold_227-snap.2-T1, internal, 8457, 8644
Couldn't classify 8478, 8668
Sorry, prediction GlimmerHMM_glimmerT_60039-T1 fails validation.
(ATG)	 GC	7993-8236	GT	GGG
(ATA)	 AG	8478-8668	GT	GAG
-recovered GlimmerHMM_glimmerT_60039-T1, initial, 7993, 8236
-recovered GlimmerHMM_glimmerT_60039-T1, internal, 8478, 8668

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_227-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_60038-T1
Valid prediction for GlimmerHMM_glimmerT_60037-T1
Valid prediction for snap_scaffold_227-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8644, rend_intergenic: 7299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9359
-exon list size: 18


building trellis

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-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 8644, rend_intergenic: 7299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support