-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_226

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 8865, 8967
Sorry, prediction snap_scaffold_226-snap.1-T1 fails validation.
(ATG)	 GG	1733-1786	GT	CCG
(GTG)	 AG	1905-2119	GT	TGG
(GGC)	 AG	3175-3229	GT	GGG
(AGT)	 AG	3553-3646	GT	AGG
(GGA)	 AG	8865-8967	GT	TTG
-recovered snap_scaffold_226-snap.1-T1, initial, 1733, 1786
-recovered snap_scaffold_226-snap.1-T1, internal, 1905, 2119
-recovered snap_scaffold_226-snap.1-T1, internal, 3175, 3229
-recovered snap_scaffold_226-snap.1-T1, internal, 3553, 3646
-recovered snap_scaffold_226-snap.1-T1, internal, 8865, 8967
Valid prediction for GlimmerHMM_glimmerT_60036-T1
Couldn't classify 8865, 8967
Sorry, prediction Augustus_model.g39764.t1 fails validation.
(ATG)	 AA	1880-1904	GT	AGG
(TCG)	 AG	3100-3161	GT	AGG
(AGT)	 AG	3553-3646	GT	AGG
(GGA)	 AG	8865-8967	GT	TTG
-recovered Augustus_model.g39764.t1, initial, 1880, 1904
-recovered Augustus_model.g39764.t1, internal, 3100, 3161
-recovered Augustus_model.g39764.t1, internal, 3553, 3646
-recovered Augustus_model.g39764.t1, internal, 8865, 8967

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9360
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support