-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2258

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61538-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 509, 618
Sorry, prediction GlimmerHMM_glimmerT_61539-T1 fails validation.
(TTC)	 AG	509-618	GT	AGG
(GTC)	 AG	821-874	GT	AGG
(TTC)	 AG	1028-1041	CA	AGC
-recovered GlimmerHMM_glimmerT_61539-T1, terminal, 1028, 1041
-recovered GlimmerHMM_glimmerT_61539-T1, internal, 509, 618
-recovered GlimmerHMM_glimmerT_61539-T1, internal, 821, 874
Couldn't classify 93, 184
Couldn't classify 1273, 1370
Sorry, prediction pasa_asmbl_30560.p1 fails validation.
(CAA)	 AG	93-184	GT	CAG
(TTC)	 AG	1028-1137	GT	AGG
(GTC)	 AG	1273-1370	GG	CAG
-recovered pasa_asmbl_30560.p1, internal, 93, 184
-recovered pasa_asmbl_30560.p1, internal, 1028, 1137
Couldn't classify 93, 184
Couldn't classify 1273, 1371
Sorry, prediction snap_scaffold_2258-snap.1-T1 fails validation.
(CAA)	 AG	93-184	GT	CAG
(TTC)	 AG	509-618	GT	AGG
(GTC)	 AG	821-874	GT	AGG
(GGG)	 AG	1045-1137	GT	AGG
(GTC)	 AG	1273-1371	GT	AGG
-recovered snap_scaffold_2258-snap.1-T1, internal, 93, 184
-recovered snap_scaffold_2258-snap.1-T1, internal, 509, 618
-recovered snap_scaffold_2258-snap.1-T1, internal, 821, 874
-recovered snap_scaffold_2258-snap.1-T1, internal, 1045, 1137
-recovered snap_scaffold_2258-snap.1-T1, internal, 1273, 1371
Couldn't classify 1273, 1371
Sorry, prediction Augustus_model.g40833.t1 fails validation.
(ATG)	 GG	120-184	GT	CAG
(TTC)	 AG	509-618	GT	AGG
(GTC)	 AG	821-874	GT	AGG
(GGG)	 AG	1045-1137	GT	AGG
(GTC)	 AG	1273-1371	GT	AGG
-recovered Augustus_model.g40833.t1, initial, 120, 184
-recovered Augustus_model.g40833.t1, internal, 509, 618
-recovered Augustus_model.g40833.t1, internal, 821, 874
-recovered Augustus_model.g40833.t1, internal, 1045, 1137
-recovered Augustus_model.g40833.t1, internal, 1273, 1371

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1429
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support