-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_225

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_225-snap.2-T1
Couldn't classify 6744, 6939
Sorry, prediction snap_scaffold_225-snap.3-T1 fails validation.
(ATG)	 AA	6022-6310	GT	ACG
(ATA)	 AG	6744-6939	GT	AGG
-recovered snap_scaffold_225-snap.3-T1, initial, 6022, 6310
-recovered snap_scaffold_225-snap.3-T1, internal, 6744, 6939
Valid prediction for GlimmerHMM_glimmerT_60035-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 224, 271
Couldn't classify 8930, 9021
Sorry, prediction snap_scaffold_225-snap.1-T1 fails validation.
(CAC)	 AG	224-271	GT	AGG
(ACG)	 AG	5041-5119	GT	TAG
(GGC)	 AG	5679-6474	GT	TGG
(TCG)	 AG	8930-9021	GT	CGG
-recovered snap_scaffold_225-snap.1-T1, internal, 224, 271
-recovered snap_scaffold_225-snap.1-T1, internal, 5041, 5119
-recovered snap_scaffold_225-snap.1-T1, internal, 5679, 6474
-recovered snap_scaffold_225-snap.1-T1, internal, 8930, 9021
Valid prediction for pasa_asmbl_30557.p2
Valid prediction for GlimmerHMM_glimmerT_60034-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9139, rend_intergenic: 3692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9362
-exon list size: 18


building trellis

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-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 9139, rend_intergenic: 3692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support