-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_224

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_224-snap.2-T1
Couldn't classify 5810, 5915
Sorry, prediction snap_scaffold_224-snap.3-T1 fails validation.
(ATG)	 GT	1852-2063	GT	ATG
(GGA)	 AG	5668-5712	GT	AGG
(TAA)	 AG	5810-5915	GT	GGG
-recovered snap_scaffold_224-snap.3-T1, initial, 1852, 2063
-recovered snap_scaffold_224-snap.3-T1, internal, 5668, 5712
-recovered snap_scaffold_224-snap.3-T1, internal, 5810, 5915

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 222, 265
Sorry, prediction Augustus_model.g39763.t1 fails validation.
(TTT)	 AG	222-265	GT	AGG
(TCT)	 AG	2583-2660	GT	TGG
(GGA)	 AG	3510-3706	GT	TGG
(GTG)	 AG	5783-5847	GT	AGG
(GTG)	 AG	5946-6052	GT	CGG
(GAC)	 AG	6298-6431	GT	ACG
(GCA)	 AG	8035-8108	CA	AGC
-recovered Augustus_model.g39763.t1, terminal, 8035, 8108
-recovered Augustus_model.g39763.t1, internal, 222, 265
-recovered Augustus_model.g39763.t1, internal, 2583, 2660
-recovered Augustus_model.g39763.t1, internal, 3510, 3706
-recovered Augustus_model.g39763.t1, internal, 5783, 5847
-recovered Augustus_model.g39763.t1, internal, 5946, 6052
-recovered Augustus_model.g39763.t1, internal, 6298, 6431
Couldn't classify 2584, 2660
Couldn't classify 6298, 6400
Sorry, prediction pasa_asmbl_30555.p1 fails validation.
(CTG)	 GT	2584-2660	GT	TGG
(GGA)	 AG	3510-3706	GT	TGG
(GTG)	 AG	5783-5847	GT	AGG
(GTG)	 AG	5946-6052	GT	CGG
(GAC)	 AG	6298-6400	GT	AGG
-recovered pasa_asmbl_30555.p1, internal, 3510, 3706
-recovered pasa_asmbl_30555.p1, internal, 5783, 5847
-recovered pasa_asmbl_30555.p1, internal, 5946, 6052
-recovered pasa_asmbl_30555.p1, internal, 6298, 6400
Couldn't classify 222, 265
Sorry, prediction GlimmerHMM_glimmerT_60033-T1 fails validation.
(TTT)	 AG	222-265	GT	AGG
(GGA)	 AG	3510-3706	GT	TGG
(GTG)	 AG	5783-6052	GT	CGG
(GAC)	 AG	6298-6329	AA	AGA
-recovered GlimmerHMM_glimmerT_60033-T1, terminal, 6298, 6329
-recovered GlimmerHMM_glimmerT_60033-T1, internal, 222, 265
-recovered GlimmerHMM_glimmerT_60033-T1, internal, 3510, 3706
-recovered GlimmerHMM_glimmerT_60033-T1, internal, 5783, 6052
Couldn't classify 222, 265
Couldn't classify 9192, 9332
Sorry, prediction snap_scaffold_224-snap.1-T1 fails validation.
(TTT)	 AG	222-265	GT	AGG
(GGA)	 AG	3510-3706	GT	TGG
(GTG)	 AG	5783-5847	GT	AGG
(GTG)	 AG	5946-6052	GT	CGG
(GAC)	 AG	6298-6400	GT	AGG
(GGT)	 AG	9192-9332	GT	TGG
-recovered snap_scaffold_224-snap.1-T1, internal, 222, 265
-recovered snap_scaffold_224-snap.1-T1, internal, 3510, 3706
-recovered snap_scaffold_224-snap.1-T1, internal, 5783, 5847
-recovered snap_scaffold_224-snap.1-T1, internal, 5946, 6052
-recovered snap_scaffold_224-snap.1-T1, internal, 6298, 6400
-recovered snap_scaffold_224-snap.1-T1, internal, 9192, 9332

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9149, rend_intergenic: 1310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9370
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 9149, rend_intergenic: 1310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support