-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2237

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 227, 329
Couldn't classify 1211, 1257
Sorry, prediction Augustus_model.g40827.t1 fails validation.
(ACG)	 AG	227-329	GT	ATG
(TGC)	 AG	700-773	GT	TGG
(ACA)	 AG	867-981	GT	AGG
(GGA)	 AG	1211-1257	GT	GGG
-recovered Augustus_model.g40827.t1, internal, 227, 329
-recovered Augustus_model.g40827.t1, internal, 700, 773
-recovered Augustus_model.g40827.t1, internal, 867, 981
-recovered Augustus_model.g40827.t1, internal, 1211, 1257
Couldn't classify 1211, 1257
Sorry, prediction GlimmerHMM_glimmerT_61529-T1 fails validation.
(ATG)	 TG	247-329	GT	ATG
(TGC)	 AG	700-773	GT	TGG
(ACA)	 AG	867-981	GT	AGG
(GGA)	 AG	1211-1257	GT	GGG
-recovered GlimmerHMM_glimmerT_61529-T1, initial, 247, 329
-recovered GlimmerHMM_glimmerT_61529-T1, internal, 700, 773
-recovered GlimmerHMM_glimmerT_61529-T1, internal, 867, 981
-recovered GlimmerHMM_glimmerT_61529-T1, internal, 1211, 1257
Couldn't classify 1211, 1256
Sorry, prediction pasa_asmbl_30553.p1 fails validation.
(ATG)	 TG	247-329	GT	ATG
(TGC)	 AG	700-773	GT	TGG
(ACA)	 AG	867-981	GT	AGG
(GGA)	 AG	1211-1256	GG	TGG
-recovered pasa_asmbl_30553.p1, initial, 247, 329
-recovered pasa_asmbl_30553.p1, internal, 700, 773
-recovered pasa_asmbl_30553.p1, internal, 867, 981
Couldn't classify 227, 329
Couldn't classify 1211, 1257
Sorry, prediction snap_scaffold_2237-snap.1-T1 fails validation.
(ACG)	 AG	227-329	GT	ATG
(TGC)	 AG	700-773	GT	TGG
(ACA)	 AG	867-981	GT	AGG
(GGA)	 AG	1211-1257	GT	GGG
-recovered snap_scaffold_2237-snap.1-T1, internal, 227, 329
-recovered snap_scaffold_2237-snap.1-T1, internal, 700, 773
-recovered snap_scaffold_2237-snap.1-T1, internal, 867, 981
-recovered snap_scaffold_2237-snap.1-T1, internal, 1211, 1257

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1448
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support