-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2231

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40822.t1
Valid prediction for GlimmerHMM_glimmerT_61524-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 254, 397
Couldn't classify 1279, 1376
Sorry, prediction snap_scaffold_2231-snap.1-T1 fails validation.
(GTC)	 AG	254-397	GT	ATG
(GTA)	 AG	718-834	GT	TGG
(AGT)	 AG	1279-1376	GT	CGG
-recovered snap_scaffold_2231-snap.1-T1, internal, 254, 397
-recovered snap_scaffold_2231-snap.1-T1, internal, 718, 834
-recovered snap_scaffold_2231-snap.1-T1, internal, 1279, 1376

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1456
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support