-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_222

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39761.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39762.t1
Valid prediction for GlimmerHMM_glimmerT_60030-T1
Couldn't classify 2558, 2698
Sorry, prediction GlimmerHMM_glimmerT_60032-T1 fails validation.
(CAG)	 AG	2558-2698	GT	GGG
(TGC)	 AG	3372-3566	AT	AAA
-recovered GlimmerHMM_glimmerT_60032-T1, terminal, 3372, 3566
-recovered GlimmerHMM_glimmerT_60032-T1, internal, 2558, 2698
Valid prediction for GlimmerHMM_glimmerT_60031-T1
Couldn't classify 8976, 9130
Sorry, prediction snap_scaffold_222-snap.1-T1 fails validation.
(ATG)	 AC	829-874	GT	GCG
(GTG)	 AG	1065-1150	GT	ATG
(CAG)	 AG	2558-2748	GT	GGG
(ACA)	 AG	3835-3978	GT	AGG
(ATG)	 AG	5286-5329	GT	AAG
(ACC)	 AG	5585-5686	GT	AGG
(AGC)	 AG	6005-6071	GT	CGG
(TTC)	 AG	6848-6940	GT	CAG
(GCG)	 AG	7558-7639	GT	AGG
(GGC)	 AG	8052-8221	GT	GGG
(GAT)	 AG	8287-8591	GT	CAG
(GGG)	 AG	8976-9130	GT	GAG
-recovered snap_scaffold_222-snap.1-T1, initial, 829, 874
-recovered snap_scaffold_222-snap.1-T1, initial, 5286, 5329
-recovered snap_scaffold_222-snap.1-T1, internal, 1065, 1150
-recovered snap_scaffold_222-snap.1-T1, internal, 2558, 2748
-recovered snap_scaffold_222-snap.1-T1, internal, 3835, 3978
-recovered snap_scaffold_222-snap.1-T1, internal, 5286, 5329
-recovered snap_scaffold_222-snap.1-T1, internal, 5585, 5686
-recovered snap_scaffold_222-snap.1-T1, internal, 6005, 6071
-recovered snap_scaffold_222-snap.1-T1, internal, 6848, 6940
-recovered snap_scaffold_222-snap.1-T1, internal, 7558, 7639
-recovered snap_scaffold_222-snap.1-T1, internal, 8052, 8221
-recovered snap_scaffold_222-snap.1-T1, internal, 8287, 8591
-recovered snap_scaffold_222-snap.1-T1, internal, 8976, 9130

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9405
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support