-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2208

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for HiQ_model.g40813.t1
Couldn't classify 303, 832
Sorry, prediction pasa_asmbl_30545.p1 fails validation.
(ATG)	 AC	115-157	GT	CTG
(ACT)	 AG	303-832	GA	GGG
-recovered pasa_asmbl_30545.p1, initial, 115, 157
Valid prediction for GlimmerHMM_glimmerT_61515-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61515-T1 336-664-initial-1 is invalid.
Valid prediction for snap_scaffold_2208-snap.1-T1
add_exon() Sorry, snap_scaffold_2208-snap.1-T1 336-664-initial-1 is invalid.
add_exon() Sorry, snap_scaffold_2208-snap.1-T1 973-1113-terminal-3 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1472
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support