-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_220

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60028-T1
Couldn't classify 210, 408
Sorry, prediction snap_scaffold_220-snap.1-T1 fails validation.
(TCA)	 AG	210-408	GT	AGG
(CGG)	 AG	622-703	GT	AGG
(CAA)	 AG	1069-1153	GT	TGG
(TAT)	 AG	1480-1672	GT	AGG
(CTT)	 AG	1889-1970	GT	AGG
(TTG)	 AG	2329-2451	GT	GAG
(CAA)	 AG	2630-2733	GT	AGG
(ACT)	 AG	3469-3593	GT	TGG
(AAG)	 AG	3765-3908	GT	AGG
(TTG)	 AG	4431-4634	GT	AGG
(TTT)	 AG	5013-5182	GT	AGG
(TTT)	 AG	5903-6024	GT	AGG
(GAA)	 AG	6715-6815	GT	AGG
(TTC)	 AG	6982-7152	GT	TTG
(GTC)	 AG	7253-7432	GC	AGG
-recovered snap_scaffold_220-snap.1-T1, terminal, 7253, 7432
-recovered snap_scaffold_220-snap.1-T1, internal, 210, 408
-recovered snap_scaffold_220-snap.1-T1, internal, 622, 703
-recovered snap_scaffold_220-snap.1-T1, internal, 1069, 1153
-recovered snap_scaffold_220-snap.1-T1, internal, 1480, 1672
-recovered snap_scaffold_220-snap.1-T1, internal, 1889, 1970
-recovered snap_scaffold_220-snap.1-T1, internal, 2329, 2451
-recovered snap_scaffold_220-snap.1-T1, internal, 2630, 2733
-recovered snap_scaffold_220-snap.1-T1, internal, 3469, 3593
-recovered snap_scaffold_220-snap.1-T1, internal, 3765, 3908
-recovered snap_scaffold_220-snap.1-T1, internal, 4431, 4634
-recovered snap_scaffold_220-snap.1-T1, internal, 5013, 5182
-recovered snap_scaffold_220-snap.1-T1, internal, 5903, 6024
-recovered snap_scaffold_220-snap.1-T1, internal, 6715, 6815
-recovered snap_scaffold_220-snap.1-T1, internal, 6982, 7152
-recovered snap_scaffold_220-snap.1-T1, internal, 7253, 7432
Couldn't classify 210, 408
Sorry, prediction Augustus_model.g39760.t1 fails validation.
(TCA)	 AG	210-408	GT	AGG
(CGG)	 AG	622-703	GT	AGG
(CAA)	 AG	1069-1219	GT	AGG
(TAT)	 AG	1480-1672	GT	AGG
(CTT)	 AG	1889-1970	GT	AGG
(TTG)	 AG	2329-2451	GT	GAG
(CAA)	 AG	2630-2733	GT	AGG
(ACT)	 AG	3469-3641	GT	AGG
(AAG)	 AG	3765-3908	GT	AGG
(TTG)	 AG	4431-4634	GT	AGG
(TTT)	 AG	5013-5182	GT	AGG
(TTT)	 AG	5903-6024	GT	AGG
(GAA)	 AG	6715-6815	GT	AGG
(TTC)	 AG	6982-7152	GT	TTG
(GTC)	 AG	7253-7432	GC	AGG
-recovered Augustus_model.g39760.t1, terminal, 7253, 7432
-recovered Augustus_model.g39760.t1, internal, 210, 408
-recovered Augustus_model.g39760.t1, internal, 622, 703
-recovered Augustus_model.g39760.t1, internal, 1069, 1219
-recovered Augustus_model.g39760.t1, internal, 1480, 1672
-recovered Augustus_model.g39760.t1, internal, 1889, 1970
-recovered Augustus_model.g39760.t1, internal, 2329, 2451
-recovered Augustus_model.g39760.t1, internal, 2630, 2733
-recovered Augustus_model.g39760.t1, internal, 3469, 3641
-recovered Augustus_model.g39760.t1, internal, 3765, 3908
-recovered Augustus_model.g39760.t1, internal, 4431, 4634
-recovered Augustus_model.g39760.t1, internal, 5013, 5182
-recovered Augustus_model.g39760.t1, internal, 5903, 6024
-recovered Augustus_model.g39760.t1, internal, 6715, 6815
-recovered Augustus_model.g39760.t1, internal, 6982, 7152
-recovered Augustus_model.g39760.t1, internal, 7253, 7432

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9409
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support